View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10201A_low_257 (Length: 231)
Name: NF10201A_low_257
Description: NF10201A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10201A_low_257 |
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Alignment Details
Target: chr4 (Bit Score: 182; Significance: 2e-98; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 182; E-Value: 2e-98
Query Start/End: Original strand, 1 - 229
Target Start/End: Original strand, 39909329 - 39909556
Alignment:
| Q |
1 |
aacaatatatatagtcagagaataacgtgcatggtcagcaaaatccttggagagttgtaaatgttaatcttaataacaataaggaggaatattcctttnn |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
39909329 |
aacaatatatatagtcagagaataacgtgcatggtcagcaaaatccttggagagttgtaaatgttaatcttaataacaataaggaggaatattcctttaa |
39909428 |
T |
|
| Q |
101 |
nnnnnnnnnnnncaataaggaggaatatcatcttgtaattattaataacaataagcaggaatatcatcttgtaatttttaatttaacaatattattccat |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
39909429 |
aaaaaaaaaaa-caataaggaggaatatcatcttgtaattattaataacaataagcaggaatatcatcttgtaatttttaatttaacaatattattccat |
39909527 |
T |
|
| Q |
201 |
tccgtgtgtttgcaagggtatatgtgtgt |
229 |
Q |
| |
|
||||||||||||||||||||||||||||| |
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| T |
39909528 |
tccgtgtgtttgcaagggtatatgtgtgt |
39909556 |
T |
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