View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF10201A_low_258 (Length: 231)
Name: NF10201A_low_258
Description: NF10201A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10201A_low_258 |
 | |
|
Alignment Details
Target: chr8 (Bit Score: 201; Significance: 1e-110; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 201; E-Value: 1e-110
Query Start/End: Original strand, 1 - 209
Target Start/End: Complemental strand, 41311235 - 41311027
Alignment:
| Q |
1 |
tggctgatttatgatgataagactgaaatggatgttattattgcctttgatttaaaggaaatgacactgtcagagactgctctcccagatggtttttata |
100 |
Q |
| |
|
|||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
41311235 |
tggctggtttatgatgataagactgaaatggatgttattattgcctttgatttaaaggaaatgacactgtcagagactgctctcccagatggtttttata |
41311136 |
T |
|
| Q |
101 |
gtgattactctactagaatttatgatttgatggtatttggcagacttattagtgtatggaatatggagatgcctacacttaagatatgggtgatgcaaga |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
41311135 |
gtgattactctactagaatttatgatttgatggtatttggcagacttattagtgtatggaatatggagatgcctacacttaagatatgggtgatgcaaga |
41311036 |
T |
|
| Q |
201 |
atacacaat |
209 |
Q |
| |
|
|||| |||| |
|
|
| T |
41311035 |
atacgcaat |
41311027 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 100; E-Value: 1e-49
Query Start/End: Original strand, 1 - 204
Target Start/End: Complemental strand, 43164913 - 43164710
Alignment:
| Q |
1 |
tggctgatttatgatgataagactgaaatggatgttattattgcctttgatttaaaggaaatgacactgtcagagactgctctcccagatggtttttata |
100 |
Q |
| |
|
|||||| ||||| || || |||||||||| |||||||||||||||| |||||||||||||| |||| ||||||||| |||||| ||||||| |||||||| |
|
|
| T |
43164913 |
tggctggtttataattatgagactgaaatagatgttattattgcctatgatttaaaggaaaagacaatgtcagagattgctcttccagatgatttttata |
43164814 |
T |
|
| Q |
101 |
gtgattactctactagaatttatgatttgatggtatttggcagacttattagtgtatggaatatggagatgcctacacttaagatatgggtgatgcaaga |
200 |
Q |
| |
|
|||||| ||| | | ||||||||||| ||||| || || ||||||| || |||||||||||||||||| ||||||||||||||||||| |||||||| |
|
|
| T |
43164813 |
gtgatttttctcccaacctttatgatttgttggtacttcgcggacttatcagcgtatggaatatggagatgtctacacttaagatatgggtaatgcaaga |
43164714 |
T |
|
| Q |
201 |
atac |
204 |
Q |
| |
|
|||| |
|
|
| T |
43164713 |
atac |
43164710 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 59; Significance: 4e-25; HSPs: 6)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 1 - 204
Target Start/End: Original strand, 30165692 - 30165883
Alignment:
| Q |
1 |
tggctgatttatgatgataagactgaaatggatgttattattgcctttgatttaaaggaaatgacactgtcagagactgctctcccagatggtttttata |
100 |
Q |
| |
|
|||||| ||||| || || ||||||||||||||||||||||||||||||||||||||||| |||| || |||||| ||||| ||| ||| || || | |
|
|
| T |
30165692 |
tggctggtttataattatcagactgaaatggatgttattattgcctttgatttaaaggaagcgacaatggcagagatagctcttccaaatgattgttctc |
30165791 |
T |
|
| Q |
101 |
gtgattactctactagaatttatgatttgatggtatttggcagacttattagtgtatggaatatggagatgcctacacttaagatatgggtgatgcaaga |
200 |
Q |
| |
|
||| |||||||||||||| |||||||| ||||||| |||||||||||| |||||| | ||||| |||||||||||||||||||||| |
|
|
| T |
30165792 |
gtg------------gaatttatgatttgttggtatttcatggacttatcagtgtatggaatgtggagaggtctacagttaagatatgggtgatgcaaga |
30165879 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 30 - 209
Target Start/End: Complemental strand, 30125160 - 30124981
Alignment:
| Q |
30 |
ggatgttattattgcctttgatttaaaggaaatgacactgtcagagactgctctcccagatggtttttatagtgattactctactagaatttatgatttg |
129 |
Q |
| |
|
|||||||||| |||||||||||||||||||| |||| ||||||| | ||||| ||| ||| |||||||| ||||||||| || | |||||||||| |
|
|
| T |
30125160 |
ggatgttattgttgcctttgatttaaaggaagcgacaatgtcagaaatagctcttccaaatgatttttataccgattactctcctgtagattatgatttg |
30125061 |
T |
|
| Q |
130 |
atggtatttggcagacttattagtgtatggaatatggagatgcctacacttaagatatgggtgatgcaagaatacacaat |
209 |
Q |
| |
|
| |||||||| ||||||| ||| |||||| | | |||||| | || |||||||| |||||||||| |||||| |||| |
|
|
| T |
30125060 |
ttagtatttggtggacttatcagtttatggattcttgagatggatgcagttaagatacgggtgatgcatgaatacgcaat |
30124981 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 33 - 106
Target Start/End: Complemental strand, 28181038 - 28180965
Alignment:
| Q |
33 |
tgttattattgcctttgatttaaaggaaatgacactgtcagagactgctctcccagatggtttttatagtgatt |
106 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| ||||||| | ||||| ||||||| ||||||||| |||| |
|
|
| T |
28181038 |
tgttattattgcctttgatttaaaggaaatgacaatgtcagatatagctcttccagatgatttttatagggatt |
28180965 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 30 - 76
Target Start/End: Complemental strand, 30131114 - 30131068
Alignment:
| Q |
30 |
ggatgttattattgcctttgatttaaaggaaatgacactgtcagaga |
76 |
Q |
| |
|
|||||||||||| |||||| ||||||||||||||||| ||||||||| |
|
|
| T |
30131114 |
ggatgttattatagcctttaatttaaaggaaatgacaatgtcagaga |
30131068 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 32 - 76
Target Start/End: Complemental strand, 30120112 - 30120068
Alignment:
| Q |
32 |
atgttattattgcctttgatttaaaggaaatgacactgtcagaga |
76 |
Q |
| |
|
|||||||||||||||||||||||||||||| |||| | ||||||| |
|
|
| T |
30120112 |
atgttattattgcctttgatttaaaggaaacgacaatatcagaga |
30120068 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #6
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 174 - 207
Target Start/End: Complemental strand, 30130967 - 30130934
Alignment:
| Q |
174 |
tacacttaagatatgggtgatgcaagaatacaca |
207 |
Q |
| |
|
|||| ||||||||||||||||||||||||||||| |
|
|
| T |
30130967 |
tacagttaagatatgggtgatgcaagaatacaca |
30130934 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 34; Significance: 0.0000000003; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 30 - 91
Target Start/End: Original strand, 21426642 - 21426703
Alignment:
| Q |
30 |
ggatgttattattgcctttgatttaaaggaaatgacactgtcagagactgctctcccagatg |
91 |
Q |
| |
|
|||||||||||||||| ||||||||||||||| ||| ||||||||| ||||| ||||||| |
|
|
| T |
21426642 |
ggatgttattattgcccttgatttaaaggaaacaacaatgtcagagatagctcttccagatg |
21426703 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University