View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF10201A_low_26 (Length: 412)
Name: NF10201A_low_26
Description: NF10201A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10201A_low_26 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 391; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 391; E-Value: 0
Query Start/End: Original strand, 6 - 408
Target Start/End: Complemental strand, 2090043 - 2089641
Alignment:
| Q |
6 |
tgttcaggacaatatttattgaaaattaaagttgatcctcaagagaatgcctcgaatcaagctgagataataacacttcatcctgattgtgtttttgata |
105 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
2090043 |
tgttcaggacaatatttattgaaaattaaagttgatcctcaagagaatgcctcgaatcaagctgagataataacacttcatcctgattgtgtttttgata |
2089944 |
T |
|
| Q |
106 |
attgtcaaagggagataaatctaaaagatggcaagatcttattggtctcatttagaggtgtaaattttgtttgttttgaactcgttgaatgtgttacaat |
205 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
2089943 |
attgtcaaagggagataaatctaaaagatggcaagatcttattggtctcatttagaggtgtaaattttgtttgttttgaactcgttgaatgtgttacaat |
2089844 |
T |
|
| Q |
206 |
gggtgttagctcttatacatggcacacaattcatcgaaaagtgaataggaagttgttgattcttaataccaatggcgaactcttgtcctttaactcttat |
305 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |
|
|
| T |
2089843 |
gggtgttagctcttatacatggcacacaattcatcgaaaagtgaataggaagttgttgattcttaataccaatggcgacctcttgtcctttaactcttat |
2089744 |
T |
|
| Q |
306 |
ggtggagttgcatttttcaagtttagaaatcttctatatttctactactacgaattcaatggcaacggcacaaattttggaatggtatcctacgacccaa |
405 |
Q |
| |
|
||||||||||||||||||||||||||||| |||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
2089743 |
ggtggagttgcatttttcaagtttagaaaccttctatatttctactactatgaattcaatggcaacggcacaaattttggaatggtatcctacgacccaa |
2089644 |
T |
|
| Q |
406 |
gtg |
408 |
Q |
| |
|
||| |
|
|
| T |
2089643 |
gtg |
2089641 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 46; Significance: 4e-17; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 18 - 95
Target Start/End: Original strand, 2879303 - 2879380
Alignment:
| Q |
18 |
tatttattgaaaattaaagttgatcctcaagagaatgcctcgaatcaagctgagataataacacttcatcctgattgt |
95 |
Q |
| |
|
|||||| |||||||||||||||||||||| ||||||| ||| ||||||||||| |||||||||| ||||||| |||| |
|
|
| T |
2879303 |
tatttagtgaaaattaaagttgatcctcaggagaatgtttcggatcaagctgaggtaataacactacatcctggttgt |
2879380 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University