View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF10201A_low_262 (Length: 230)

Name: NF10201A_low_262
Description: NF10201A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF10201A_low_262
NF10201A_low_262
[»] chr7 (1 HSPs)
chr7 (1-224)||(38981296-38981519)


Alignment Details
Target: chr7 (Bit Score: 220; Significance: 1e-121; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 220; E-Value: 1e-121
Query Start/End: Original strand, 1 - 224
Target Start/End: Original strand, 38981296 - 38981519
Alignment:
Q  1 tgtgcctttaatcatactagattttaggacatatatataatttttctatttttgaagagttgaattttactacaattgttataagcaatttgatatatat 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  38981296 tgtgcctttaatcatactagattttaggacatatatataatttttctatttttgaagagttgaattttactacaattgttataagcaatttgatatatat 38981395  T
Q  101 gccacaaatggaatttaaatttgaactttgaagctacatttgtggcaagtagtcatttccatacatagtgatcgatgtggatgacattatttggaatgat 200  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||    
T  38981396 gccacaaatggaatttaaatttgaactttgaagctacatttgtggcaagtagtcatttccatacatagtgatcgatgtggataacattatttggaatgat 38981495  T
Q  201 tcccatatatgtatatattgatat 224  Q
    ||||||||||||||||||||||||    
T  38981496 tcccatatatgtatatattgatat 38981519  T

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