View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10201A_low_266 (Length: 230)
Name: NF10201A_low_266
Description: NF10201A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10201A_low_266 |
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Alignment Details
Target: chr4 (Bit Score: 179; Significance: 9e-97; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 179; E-Value: 9e-97
Query Start/End: Original strand, 1 - 225
Target Start/End: Original strand, 32385600 - 32385821
Alignment:
| Q |
1 |
aaagcaacatacaatttgagacgtaaggagtattaaataattgaacttgccaattgtcatattttttgtatggatcttgttaacaggtgccctcgaggca |
100 |
Q |
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| T |
32385600 |
aaagcaacatacaatttgagatgtaaggagtattaaataattgaacttgccaattgtcatattttttgtatggatcttgttaacaagtgccctcgaagca |
32385699 |
T |
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| Q |
101 |
ttggctaaggaatccgcagatacaaattttgtcttgaaaacataagttgttatttttaataaaacttgttttgattgcttcaccaatatccatgtattta |
200 |
Q |
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| T |
32385700 |
ctggctaaggaatcc---gatacaaattttatcttgaaaacataagttgttatttttaataaaacttgttttgattgcttaaccaatgtccatgtattta |
32385796 |
T |
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| Q |
201 |
tattcctaaaacttttttatttatt |
225 |
Q |
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|||| |||||||||||||||||||| |
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| T |
32385797 |
tatttctaaaacttttttatttatt |
32385821 |
T |
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Target: chr7 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 88 - 157
Target Start/End: Complemental strand, 19677124 - 19677055
Alignment:
| Q |
88 |
tgccctcgaggcattggctaaggaatccgcagatacaaattttgtcttgaaaacataagttgttattttt |
157 |
Q |
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| T |
19677124 |
tgccctcagggcattggttaaggaatcgacaaatagaaattttgtcttgaaaatataagatgttactttt |
19677055 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 87 - 163
Target Start/End: Original strand, 44648921 - 44648997
Alignment:
| Q |
87 |
gtgccctcgaggcattggctaaggaatccgcagatacaaattttgtcttgaaaacataagttgttatttttaataaa |
163 |
Q |
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| T |
44648921 |
gtgccctcggggcaatggttaaggaatctacaaatagaaattttgtcttgaaaatataaaatgttacttttgataaa |
44648997 |
T |
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