View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF10201A_low_277 (Length: 230)

Name: NF10201A_low_277
Description: NF10201A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF10201A_low_277
NF10201A_low_277
[»] chr2 (14 HSPs)
chr2 (6-218)||(8579553-8579765)
chr2 (6-67)||(9061358-9061419)
chr2 (7-76)||(9364511-9364580)
chr2 (126-221)||(17566146-17566241)
chr2 (6-76)||(7115835-7115905)
chr2 (6-76)||(9284380-9284450)
chr2 (98-155)||(9291899-9291956)
chr2 (6-75)||(10335738-10335807)
chr2 (96-139)||(9274475-9274518)
chr2 (179-221)||(7611976-7612018)
chr2 (5-67)||(8573725-8573787)
chr2 (179-221)||(9364665-9364707)
chr2 (96-221)||(8573568-8573693)
chr2 (6-67)||(9291804-9291865)
[»] chr3 (2 HSPs)
chr3 (93-221)||(39427591-39427722)
chr3 (96-221)||(37462443-37462568)
[»] chr1 (4 HSPs)
chr1 (6-68)||(29423147-29423209)
chr1 (6-76)||(29453494-29453564)
chr1 (6-68)||(29467978-29468040)
chr1 (9-68)||(29443519-29443578)
[»] chr4 (2 HSPs)
chr4 (94-221)||(561174-561301)
chr4 (7-72)||(561066-561131)
[»] chr5 (2 HSPs)
chr5 (94-221)||(36224364-36224497)
chr5 (19-75)||(36224295-36224351)
[»] chr7 (3 HSPs)
chr7 (9-67)||(45243555-45243613)
chr7 (9-67)||(45230293-45230351)
chr7 (99-221)||(45243656-45243778)
[»] chr8 (1 HSPs)
chr8 (6-63)||(41966911-41966968)


Alignment Details
Target: chr2 (Bit Score: 189; Significance: 1e-102; HSPs: 14)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 189; E-Value: 1e-102
Query Start/End: Original strand, 6 - 218
Target Start/End: Complemental strand, 8579765 - 8579553
Alignment:
Q  6 aattaggaattccttgaacacaagtaacttcttcacttttgagatcataccaaaacagcttcttacaatctctatagagatcacctgttacttccaacag 105  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |||||||||||||    
T  8579765 aattaggaattccttgaacacaagtaacttcttcacttttgagatcataccaaaacagcttcttacaatctctatagagattaccttttacttccaacag 8579666  T
Q  106 aaatttacttctatcactagaataacataaaggcttcaaagatctcaaagggttattgaagcacgaatcctcaaaagtaaacaatttacaccaactatca 205  Q
    || |||||||||||||||||||||||| ||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||     
T  8579665 aactttacttctatcactagaataacacaaaggcttcaaagatctcaaaggtttattgaagcacgaatcctcaaaagtaaacaatttacaccaactatct 8579566  T
Q  206 ctaaatccatatt 218  Q
    |||||||||||||    
T  8579565 ctaaatccatatt 8579553  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 6 - 67
Target Start/End: Complemental strand, 9061419 - 9061358
Alignment:
Q  6 aattaggaattccttgaacacaagtaacttcttcacttttgagatcataccaaaacagcttc 67  Q
    ||||||||||||||| |||| || |||||| |||||| ||||||||||||||||||||||||    
T  9061419 aattaggaattccttcaacataactaacttgttcactcttgagatcataccaaaacagcttc 9061358  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 7 - 76
Target Start/End: Original strand, 9364511 - 9364580
Alignment:
Q  7 attaggaattccttgaacacaagtaacttcttcacttttgagatcataccaaaacagcttcttacaatct 76  Q
    ||||||||||||| |||||| |||||| | |||||| |||||||| ||||||||||||||||||| ||||    
T  9364511 attaggaattcctggaacactagtaacgttttcactcttgagatcgtaccaaaacagcttcttacgatct 9364580  T

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Target: chr2; HSP #4
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 126 - 221
Target Start/End: Complemental strand, 17566241 - 17566146
Alignment:
Q  126 aataacataaaggcttcaaagatctcaaagggttattgaagcacgaatcctcaaaagtaaacaatttacaccaactatcactaaatccatattctt 221  Q
    |||||||||||||||||||| || |||||||  || |||| | | | ||  | || |||||||||||||||||| |||| ||||||||||||||||    
T  17566241 aataacataaaggcttcaaatatatcaaaggtatactgaaacgccactcgcccaaggtaaacaatttacaccaattatctctaaatccatattctt 17566146  T

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Target: chr2; HSP #5
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 6 - 76
Target Start/End: Complemental strand, 7115905 - 7115835
Alignment:
Q  6 aattaggaattccttgaacacaagtaacttcttcacttttgagatcataccaaaacagcttcttacaatct 76  Q
    ||||||||||||||| ||||||| |||||| ||| || || | ||||||||||| ||||||| ||||||||    
T  7115905 aattaggaattccttcaacacaactaacttgttcgctcttcaaatcataccaaaccagcttcctacaatct 7115835  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 6 - 76
Target Start/End: Complemental strand, 9284450 - 9284380
Alignment:
Q  6 aattaggaattccttgaacacaagtaacttcttcacttttgagatcataccaaaacagcttcttacaatct 76  Q
    ||||||||||||||| |||| || ||||||  ||||| || | ||||||||||| ||||||||||||||||    
T  9284450 aattaggaattccttcaacataaataacttgctcactcttcaaatcataccaaaccagcttcttacaatct 9284380  T

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Target: chr2; HSP #7
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 98 - 155
Target Start/End: Original strand, 9291899 - 9291956
Alignment:
Q  98 tccaacagaaatttacttctatcactagaataacataaaggcttcaaagatctcaaag 155  Q
    ||||||||||  ||||||| ||| |||||||||||||||||| |||||||| ||||||    
T  9291899 tccaacagaaccttacttccatccctagaataacataaaggcctcaaagatttcaaag 9291956  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 6 - 75
Target Start/End: Original strand, 10335738 - 10335807
Alignment:
Q  6 aattaggaattccttgaacacaagtaacttcttcacttttgagatcataccaaaacagcttcttacaatc 75  Q
    ||||||||||||||| |||| || ||| || |||||| || | |||||||||||||| ||||||||||||    
T  10335738 aattaggaattccttcaacataactaatttgttcactcttcaaatcataccaaaacaacttcttacaatc 10335807  T

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Target: chr2; HSP #9
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 96 - 139
Target Start/End: Original strand, 9274475 - 9274518
Alignment:
Q  96 cttccaacagaaatttacttctatcactagaataacataaaggc 139  Q
    ||||||||||||  ||||||| ||||||||||||||||||||||    
T  9274475 cttccaacagaaccttacttccatcactagaataacataaaggc 9274518  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 179 - 221
Target Start/End: Original strand, 7611976 - 7612018
Alignment:
Q  179 aaagtaaacaatttacaccaactatcactaaatccatattctt 221  Q
    ||||||||||||||||||||||||||  | |||||||||||||    
T  7611976 aaagtaaacaatttacaccaactatcttttaatccatattctt 7612018  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 5 - 67
Target Start/End: Complemental strand, 8573787 - 8573725
Alignment:
Q  5 caattaggaattccttgaacacaagtaacttcttcacttttgagatcataccaaaacagcttc 67  Q
    |||||||||||||||| |||| || | |||| |||||| || | |||||||||||||||||||    
T  8573787 caattaggaattccttcaacataactgacttgttcactcttcaaatcataccaaaacagcttc 8573725  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 179 - 221
Target Start/End: Original strand, 9364665 - 9364707
Alignment:
Q  179 aaagtaaacaatttacaccaactatcactaaatccatattctt 221  Q
    ||||||||||||||||||||||||||  | |||||||||||||    
T  9364665 aaagtaaacaatttacaccaactatcttttaatccatattctt 9364707  T

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Target: chr2; HSP #13
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 96 - 221
Target Start/End: Complemental strand, 8573693 - 8573568
Alignment:
Q  96 cttccaacagaaatttacttctatcactagaataacataaaggcttcaaagatctcaaagggttattgaagcacgaatcctcaaaagtaaacaatttaca 195  Q
    ||||||||||||  ||||||| |||||||||||||| ||||||| || ||||| | ||| |   | |||| ||||| |   | |||||||| | ||||||    
T  8573693 cttccaacagaaccttacttccatcactagaataacctaaaggcctcgaagatttaaaatgtggagtgaaacacgatttaacgaaagtaaaaagtttaca 8573594  T
Q  196 ccaactatcactaaatccatattctt 221  Q
    ||||||||| ||| | ||||||||||    
T  8573593 ccaactatctctagaaccatattctt 8573568  T

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Target: chr2; HSP #14
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 6 - 67
Target Start/End: Original strand, 9291804 - 9291865
Alignment:
Q  6 aattaggaattccttgaacacaagtaacttcttcacttttgagatcataccaaaacagcttc 67  Q
    ||||||||||||||| |||| || ||| || |||||| || | |||||||||||||||||||    
T  9291804 aattaggaattccttcaacataactaatttgttcactcttcaaatcataccaaaacagcttc 9291865  T

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Target: chr3 (Bit Score: 58; Significance: 2e-24; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 93 - 221
Target Start/End: Original strand, 39427591 - 39427722
Alignment:
Q  93 ttacttccaacagaaatttacttctatcactagaataacataaaggcttcaaagatctcaaagggttattgaagcacgaatcc---tcaaaagtaaacaa 189  Q
    ||||||||||||||| ||||||||||||||| |||||||||||||||||||||||  | |||||   |||||| ||| | |||    |||||||||||||    
T  39427591 ttacttccaacagaactttacttctatcactggaataacataaaggcttcaaagacattaaaggtgaattgaaacaccattcccctacaaaagtaaacaa 39427690  T
Q  190 tttacaccaactatcactaaatccatattctt 221  Q
    ||||||||||||||  ||| ||||||||||||    
T  39427691 tttacaccaactatatctatatccatattctt 39427722  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 96 - 221
Target Start/End: Original strand, 37462443 - 37462568
Alignment:
Q  96 cttccaacagaaatttacttctatcactagaataacataaaggcttcaaagatctcaaagggttattgaagcacgaatcctcaaaagtaaacaatttaca 195  Q
    ||||||||| ||  ||||||| |||||||||||||||||||||| |||||||| |||||||   | |||| ||||| |  || | |||| | | ||||||    
T  37462443 cttccaacaaaaccttacttccatcactagaataacataaaggcctcaaagatttcaaaggtgaagtgaaacacgatttatccacagtacaaagtttaca 37462542  T
Q  196 ccaactatcactaaatccatattctt 221  Q
    ||||||||| ||| ||||||||||||    
T  37462543 ccaactatctctagatccatattctt 37462568  T

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Target: chr1 (Bit Score: 51; Significance: 2e-20; HSPs: 4)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 6 - 68
Target Start/End: Original strand, 29423147 - 29423209
Alignment:
Q  6 aattaggaattccttgaacacaagtaacttcttcacttttgagatcataccaaaacagcttct 68  Q
    ||||||||||||||||||||||| |||||| |||||| |||||||||||||||||||||||||    
T  29423147 aattaggaattccttgaacacaactaacttgttcactcttgagatcataccaaaacagcttct 29423209  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 6 - 76
Target Start/End: Complemental strand, 29453564 - 29453494
Alignment:
Q  6 aattaggaattccttgaacacaagtaacttcttcacttttgagatcataccaaaacagcttcttacaatct 76  Q
    ||||||||||||||| ||||||| |||||| |||||| ||||||||||||||||||||||||| |||||||    
T  29453564 aattaggaattccttcaacacaactaacttgttcactcttgagatcataccaaaacagcttctcacaatct 29453494  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 6 - 68
Target Start/End: Complemental strand, 29468040 - 29467978
Alignment:
Q  6 aattaggaattccttgaacacaagtaacttcttcacttttgagatcataccaaaacagcttct 68  Q
    ||||||||||||||| |||| || |||| | |||||| ||||||||||||||||||| |||||    
T  29468040 aattaggaattccttcaacataattaacatgttcactcttgagatcataccaaaacaacttct 29467978  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 9 - 68
Target Start/End: Complemental strand, 29443578 - 29443519
Alignment:
Q  9 taggaattccttgaacacaagtaacttcttcacttttgagatcataccaaaacagcttct 68  Q
    |||||||||||| |||| || ||||   |||||| |||||||||||||||||||||||||    
T  29443578 taggaattccttcaacataactaacacattcactcttgagatcataccaaaacagcttct 29443519  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 48; Significance: 1e-18; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 94 - 221
Target Start/End: Original strand, 561174 - 561301
Alignment:
Q  94 tacttccaacagaaatttacttctatcactagaataacataaaggcttcaaagatctcaaagggttattgaagcacgaatcctcaaaagtaaacaattta 193  Q
    |||||||||||||| |||||||||||||| |||||||| |||||||||| | | | | |||||  || ||||  ||   ||||| ||||||||||||  |    
T  561174 tacttccaacagaactttacttctatcaccagaataacctaaaggcttccatggtgtaaaaggtctactgaaaaacacttcctccaaagtaaacaataca 561273  T
Q  194 caccaactatcactaaatccatattctt 221  Q
    ||||||||||| ||||||||||||||||    
T  561274 caccaactatctctaaatccatattctt 561301  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 7 - 72
Target Start/End: Original strand, 561066 - 561131
Alignment:
Q  7 attaggaattccttgaacacaagtaacttcttcacttttgagatcataccaaaacagcttcttaca 72  Q
    ||||||||||||| ||||||| ||| ||  || ||||||||||||||||||||||| ||| |||||    
T  561066 attaggaattcctggaacacaggtagctcttttacttttgagatcataccaaaacaactttttaca 561131  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 47; Significance: 6e-18; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 94 - 221
Target Start/End: Original strand, 36224364 - 36224497
Alignment:
Q  94 tacttccaacagaaatttacttctatcactagaataacataaaggcttcaaagatctc------aaagggttattgaagcacgaatcctcaaaagtaaac 187  Q
    |||||||||||||| ||||||||||||||| ||||||||| |||||||||||||| ||      |||||   || |||  || | |||   |||||||||    
T  36224364 tacttccaacagaactttacttctatcactggaataacatgaaggcttcaaagatatcaatttaaaaggtgaatcgaaataccattcccacaaagtaaac 36224463  T
Q  188 aatttacaccaactatcactaaatccatattctt 221  Q
    ||||||||||||||||| ||||||||||||||||    
T  36224464 aatttacaccaactatctctaaatccatattctt 36224497  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 19 - 75
Target Start/End: Original strand, 36224295 - 36224351
Alignment:
Q  19 ttgaacacaagtaacttcttcacttttgagatcataccaaaacagcttcttacaatc 75  Q
    ||||||||| |||||||| | ||||||||||| ||||||||||  ||||||| ||||    
T  36224295 ttgaacacaggtaacttcataacttttgagataataccaaaactccttcttagaatc 36224351  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 43; Significance: 0.000000000000001; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 9 - 67
Target Start/End: Original strand, 45243555 - 45243613
Alignment:
Q  9 taggaattccttgaacacaagtaacttcttcacttttgagatcataccaaaacagcttc 67  Q
    ||||||||||||||||| |||||| || |||||| ||||||||||||||||||||||||    
T  45243555 taggaattccttgaacataagtaagttgttcactgttgagatcataccaaaacagcttc 45243613  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 9 - 67
Target Start/End: Original strand, 45230293 - 45230351
Alignment:
Q  9 taggaattccttgaacacaagtaacttcttcacttttgagatcataccaaaacagcttc 67  Q
    |||||||||||||||||  |||||||| |||||| |||| |||||||||||||||||||    
T  45230293 taggaattccttgaacatgagtaacttgttcactcttgaaatcataccaaaacagcttc 45230351  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 99 - 221
Target Start/End: Original strand, 45243656 - 45243778
Alignment:
Q  99 ccaacagaaatttacttctatcactagaataacataaaggcttcaaagatctcaaagggttattgaagcacgaatcctcaaaagtaaacaatttacacca 198  Q
    ||||||||| |||||||| |||||| ||||||||||||||| ||||||||  |||| |   |||||| ||||| |   | |||||||| | |||||||||    
T  45243656 ccaacagaactttacttcgatcactcgaataacataaaggcctcaaagattccaaatgaaaattgaaacacgatttaaccaaagtaaaaagtttacacca 45243755  T
Q  199 actatcactaaatccatattctt 221  Q
    | |||| ||| | ||||||||||    
T  45243756 aatatctctagaaccatattctt 45243778  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 6 - 63
Target Start/End: Complemental strand, 41966968 - 41966911
Alignment:
Q  6 aattaggaattccttgaacacaagtaacttcttcacttttgagatcataccaaaacag 63  Q
    ||||||||||||||| |||| |||||| || |||||| || | |||||||||||||||    
T  41966968 aattaggaattccttcaacataagtaatttgttcactcttcaaatcataccaaaacag 41966911  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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