View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10201A_low_280 (Length: 229)
Name: NF10201A_low_280
Description: NF10201A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10201A_low_280 |
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Alignment Details
Target: chr2 (Bit Score: 134; Significance: 7e-70; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 134; E-Value: 7e-70
Query Start/End: Original strand, 1 - 195
Target Start/End: Original strand, 3344210 - 3344415
Alignment:
| Q |
1 |
aaactaattgaaataagttgaaaataatttatgaatatgttagttattttcgtaaacacatatatatcatnnnnnnntctaataagatggaaacaaatta |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |
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| T |
3344210 |
aaactaattgaaataagttgaaaataatttatgaatatgttagttattttcgtaaacacatatatatcataaaaaaatctaataagatggaaacaaatta |
3344309 |
T |
|
| Q |
101 |
ctcgaaacacaatttatgaatgtgt--gtgcaaaagagagat---------agccacgtatcaccgaaatttcaaatgaatgcgtgttcaatgtatgcca |
189 |
Q |
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||||||||||||||||||||||||| ||||||||||||||| || ||||||||||||||||||||||||||||||||||||||| |||||| |
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| T |
3344310 |
ctcgaaacacaatttatgaatgtgtacgtgcaaaagagagatatagaaaacaggcacgtatcaccgaaatttcaaatgaatgcgtgttcaatgcatgcca |
3344409 |
T |
|
| Q |
190 |
tgtgtc |
195 |
Q |
| |
|
|||||| |
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|
| T |
3344410 |
tgtgtc |
3344415 |
T |
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