View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF10201A_low_283 (Length: 229)
Name: NF10201A_low_283
Description: NF10201A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10201A_low_283 |
 | |
|
| [»] scaffold0654 (2 HSPs) |
| | |
|
Alignment Details
Target: chr1 (Bit Score: 203; Significance: 1e-111; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 203; E-Value: 1e-111
Query Start/End: Original strand, 1 - 228
Target Start/End: Original strand, 31133852 - 31134085
Alignment:
| Q |
1 |
tccttaatcattccttgtcttccttcttctatttcgtgaaaacaaaacttggcttattccacaccactgtgagtttagaaaacaaaaacatttgctgaat |
100 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
31133852 |
tccttaatcattccttgtcttccttcttctatttcgtgaaaacaaaagttggcttattccacaccactgtgagtttagaaaacaaaaacatttgctgaat |
31133951 |
T |
|
| Q |
101 |
gcctctcccctcagttccatccaccaccaaaaccctaaattctccatcccctttctatcaccaccatgccactttcttcc------aatccaaatccaaa |
194 |
Q |
| |
|
|||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |
|
|
| T |
31133952 |
gcctctcctctcagttccatccaccaccaaaaccctaaattctccatcccctttctatcaccaccatgccactttcttccaatccaaatccaaatccaaa |
31134051 |
T |
|
| Q |
195 |
ttcaaattcaaacccaaatttcaatttcatccaa |
228 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| |
|
|
| T |
31134052 |
ttcaaattcaaacccaaatttcaatttcatccaa |
31134085 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0654 (Bit Score: 29; Significance: 0.0000003; HSPs: 2)
Name: scaffold0654
Description:
Target: scaffold0654; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 181 - 213
Target Start/End: Original strand, 4439 - 4471
Alignment:
| Q |
181 |
aatccaaatccaaattcaaattcaaacccaaat |
213 |
Q |
| |
|
|||||||||||||||||||||||||| |||||| |
|
|
| T |
4439 |
aatccaaatccaaattcaaattcaaatccaaat |
4471 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0654; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 181 - 213
Target Start/End: Original strand, 5793 - 5825
Alignment:
| Q |
181 |
aatccaaatccaaattcaaattcaaacccaaat |
213 |
Q |
| |
|
|||||||||||||||||||||||||| |||||| |
|
|
| T |
5793 |
aatccaaatccaaattcaaattcaaatccaaat |
5825 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University