View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF10201A_low_29 (Length: 404)

Name: NF10201A_low_29
Description: NF10201A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF10201A_low_29
NF10201A_low_29
[»] chr3 (2 HSPs)
chr3 (185-404)||(49123952-49124171)
chr3 (27-192)||(49124225-49124390)
[»] chr4 (1 HSPs)
chr4 (244-351)||(4271421-4271528)
[»] chr1 (1 HSPs)
chr1 (244-351)||(2807765-2807872)
[»] chr6 (2 HSPs)
chr6 (43-91)||(11683218-11683266)
chr6 (32-91)||(18988416-18988475)
[»] chr8 (1 HSPs)
chr8 (32-91)||(30341290-30341349)
[»] chr5 (1 HSPs)
chr5 (32-91)||(23917049-23917108)


Alignment Details
Target: chr3 (Bit Score: 220; Significance: 1e-121; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 220; E-Value: 1e-121
Query Start/End: Original strand, 185 - 404
Target Start/End: Complemental strand, 49124171 - 49123952
Alignment:
Q  185 ttatgaatattaaaatctatgttaacacacttaacatatttacattcttctttgatgaccagaggattagaatatctacatgagcattgttaccctcgag 284  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  49124171 ttatgaatattaaaatctatgttaacacacttaacatatttacattcttctttgatgaccagaggattagaatatctacatgagcattgttaccctcgag 49124072  T
Q  285 tgattcatagagatatgaaatcttcaaatattcttttagatgcaaacttcaatgccaaggtaaaaaactgaatttactatatattttatcttcttccaca 384  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  49124071 tgattcatagagatatgaaatcttcaaatattcttttagatgcaaacttcaatgccaaggtaaaaaactgaatttactatatattttatcttcttccaca 49123972  T
Q  385 aagtattttattcaccaaag 404  Q
    ||||||||||||||||||||    
T  49123971 aagtattttattcaccaaag 49123952  T

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Target: chr3; HSP #2
Raw Score: 162; E-Value: 2e-86
Query Start/End: Original strand, 27 - 192
Target Start/End: Complemental strand, 49124390 - 49124225
Alignment:
Q  27 cttggaatgtagttatggctttttcaatcacaacattaaccaagtatacaaaattcaaaattacaactgttaacaaattaatgaacaattccgattggag 126  Q
    ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  49124390 cttggaatgtagttaaggctttttcaatcacaacattaaccaagtatacaaaattcaaaattacaactgttaacaaattaatgaacaattccgattggag 49124291  T
Q  127 aagttatagatcgttttcattctgcatcttaaaagttttgtccccttaacaaagtttattatgaat 192  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  49124290 aagttatagatcgttttcattctgcatcttaaaagttttgtccccttaacaaagtttattatgaat 49124225  T

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Target: chr4 (Bit Score: 68; Significance: 3e-30; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 68; E-Value: 3e-30
Query Start/End: Original strand, 244 - 351
Target Start/End: Original strand, 4271421 - 4271528
Alignment:
Q  244 cagaggattagaatatctacatgagcattgttaccctcgagtgattcatagagatatgaaatcttcaaatattcttttagatgcaaacttcaatgccaag 343  Q
    |||||| ||| ||||||| |||||||| || ||||||  |||||| ||||||||| |||||||||| |||||||||||||||||||||||||||||||||    
T  4271421 cagaggtttaaaatatctgcatgagcactgctaccctgcagtgatccatagagatctgaaatcttctaatattcttttagatgcaaacttcaatgccaag 4271520  T
Q  344 gtaaaaaa 351  Q
    ||||||||    
T  4271521 gtaaaaaa 4271528  T

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Target: chr1 (Bit Score: 68; Significance: 3e-30; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 68; E-Value: 3e-30
Query Start/End: Original strand, 244 - 351
Target Start/End: Original strand, 2807765 - 2807872
Alignment:
Q  244 cagaggattagaatatctacatgagcattgttaccctcgagtgattcatagagatatgaaatcttcaaatattcttttagatgcaaacttcaatgccaag 343  Q
    |||||| ||| ||||||| |||||||| || ||||||  |||||| ||||||||| |||||||||| |||||||||||||||||||||||||||||||||    
T  2807765 cagaggtttaaaatatctgcatgagcactgctaccctgcagtgatccatagagatctgaaatcttctaatattcttttagatgcaaacttcaatgccaag 2807864  T
Q  344 gtaaaaaa 351  Q
    ||||||||    
T  2807865 gtaaaaaa 2807872  T

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Target: chr6 (Bit Score: 37; Significance: 0.000000000009; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 43 - 91
Target Start/End: Complemental strand, 11683266 - 11683218
Alignment:
Q  43 ggctttttcaatcacaacattaaccaagtatacaaaattcaaaattaca 91  Q
    |||| ||||||||||||| |||||| |||||||||||||||||||||||    
T  11683266 ggctatttcaatcacaactttaacctagtatacaaaattcaaaattaca 11683218  T

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Target: chr6; HSP #2
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 32 - 91
Target Start/End: Complemental strand, 18988475 - 18988416
Alignment:
Q  32 aatgtagttatggctttttcaatcacaacattaaccaagtatacaaaattcaaaattaca 91  Q
    |||||||||| |||| ||||||| ||||| |||||||||| | |||| ||||||||||||    
T  18988475 aatgtagttaaggctatttcaattacaactttaaccaagtttgcaaagttcaaaattaca 18988416  T

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Target: chr8 (Bit Score: 36; Significance: 0.00000000004; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 32 - 91
Target Start/End: Original strand, 30341290 - 30341349
Alignment:
Q  32 aatgtagttatggctttttcaatcacaacattaaccaagtatacaaaattcaaaattaca 91  Q
    |||||||||| |||| ||||||| ||||| |||||||||| |||||| ||||||||||||    
T  30341290 aatgtagttaaggctatttcaattacaactttaaccaagtttacaaagttcaaaattaca 30341349  T

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Target: chr5 (Bit Score: 32; Significance: 0.000000009; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 32 - 91
Target Start/End: Original strand, 23917049 - 23917108
Alignment:
Q  32 aatgtagttatggctttttcaatcacaacattaaccaagtatacaaaattcaaaattaca 91  Q
    |||||||||| |||| ||||||| ||||| |||||||||| | |||| ||||||||||||    
T  23917049 aatgtagttaaggctatttcaattacaactttaaccaagtttgcaaagttcaaaattaca 23917108  T

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