View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10201A_low_298 (Length: 227)
Name: NF10201A_low_298
Description: NF10201A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10201A_low_298 |
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| [»] chr8 (5 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 222; Significance: 1e-122; HSPs: 5)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 222; E-Value: 1e-122
Query Start/End: Original strand, 6 - 227
Target Start/End: Original strand, 4123722 - 4123943
Alignment:
| Q |
6 |
aattgtaagtaatataagtagttccatcattgtcttgaacaaaatgccaaccgtgtaaatacttggttaacatactcggtgttccgagaaaaaccaatcc |
105 |
Q |
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| T |
4123722 |
aattgtaagtaatataagtagttccatcattgtcttgaacaaaatgccaaccgtgtaaatacttggttaacatactcggtgttccgagaaaaaccaatcc |
4123821 |
T |
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| Q |
106 |
attccatggaccagttctccaatgaattttcttatcataccaaatgaaaacttctggtgcatccaatctttcaagactagctgaataatgtcctgaagaa |
205 |
Q |
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| T |
4123822 |
attccatggaccagttctccaatgaattttcttatcataccaaatgaaaacttctggtgcatccaatctttcaagactagctgaataatgtcctgaagaa |
4123921 |
T |
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| Q |
206 |
ggatcattatcactttttcttg |
227 |
Q |
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| T |
4123922 |
ggatcattatcactttttcttg |
4123943 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 162; E-Value: 1e-86
Query Start/End: Original strand, 6 - 227
Target Start/End: Original strand, 4153072 - 4153293
Alignment:
| Q |
6 |
aattgtaagtaatataagtagttccatcattgtcttgaacaaaatgccaaccgtgtaaatacttggttaacatactcggtgttccgagaaaaaccaatcc |
105 |
Q |
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| T |
4153072 |
aattgtaagtaatataagtagttccatcagtgtcttgatcaaaacgccaaccggctaaatactcggttaacattctcggtgatccgagaaaaacccttcc |
4153171 |
T |
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| Q |
106 |
attccatggaccagttctccaatgaattttcttatcataccaaatgaaaacttctggtgcatccaatctttcaagactagctgaataatgtcctgaagaa |
205 |
Q |
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| T |
4153172 |
attccatggacctgttctccaatgaatatttttatctttccaaatgaaaacttctggtgcatccaatctttcaagactagctgaataatgtcctgaagaa |
4153271 |
T |
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| Q |
206 |
ggatcattatcactttttcttg |
227 |
Q |
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| T |
4153272 |
ggatcattatcactttttcttg |
4153293 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 141; E-Value: 4e-74
Query Start/End: Original strand, 19 - 227
Target Start/End: Original strand, 4163438 - 4163646
Alignment:
| Q |
19 |
ataagtagttccatcattgtcttgaacaaaatgccaaccgtgtaaatacttggttaacatactcggtgttccgagaaaaaccaatccattccatggacca |
118 |
Q |
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| T |
4163438 |
ataagtagttccatctttgtcttgatcaaaacgccaaccggctaaatactcggttaacattctcggtgatccgagaaaaaccgttccattccatggacca |
4163537 |
T |
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| Q |
119 |
gttctccaatgaattttcttatcataccaaatgaaaacttctggtgcatccaatctttcaagactagctgaataatgtcctgaagaaggatcattatcac |
218 |
Q |
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| T |
4163538 |
gttctccaatgaattctcttatcataccaaataaaaacttctggtgcatccaatctttcaagacttcctatataatgtcctgaagaaggatcattttcac |
4163637 |
T |
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| Q |
219 |
tttttcttg |
227 |
Q |
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| T |
4163638 |
tttttcttg |
4163646 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 86; E-Value: 3e-41
Query Start/End: Original strand, 86 - 227
Target Start/End: Original strand, 4134347 - 4134488
Alignment:
| Q |
86 |
gttccgagaaaaaccaatccattccatggaccagttctccaatgaattttcttatcataccaaatgaaaacttctggtgcatccaatctttcaagactag |
185 |
Q |
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| T |
4134347 |
gttccgagaaaaacccttccattccatggaccagttctccaataaatttttttatctttccaaatgaaaacttctggtacatccaatctttcaacactaa |
4134446 |
T |
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| Q |
186 |
ctgaataatgtcctgaagaaggatcattatcactttttcttg |
227 |
Q |
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| T |
4134447 |
ttgtaaaatgtcccgaagaaggatcattgtcactttttcttg |
4134488 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 82; E-Value: 7e-39
Query Start/End: Original strand, 86 - 227
Target Start/End: Original strand, 4145149 - 4145290
Alignment:
| Q |
86 |
gttccgagaaaaaccaatccattccatggaccagttctccaatgaattttcttatcataccaaatgaaaacttctggtgcatccaatctttcaagactag |
185 |
Q |
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| T |
4145149 |
gttccgagaaaaactcttccattccatggaccagttctccaataaatttttttatctttccaaatgaaaacttctggtacatccaatctttcaacactaa |
4145248 |
T |
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| Q |
186 |
ctgaataatgtcctgaagaaggatcattatcactttttcttg |
227 |
Q |
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| T |
4145249 |
ttgtaaaatgtcccgaagaaggatcattgtcactttttcttg |
4145290 |
T |
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