View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10201A_low_3 (Length: 546)
Name: NF10201A_low_3
Description: NF10201A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10201A_low_3 |
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Alignment Details
Target: chr2 (Bit Score: 425; Significance: 0; HSPs: 4)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 425; E-Value: 0
Query Start/End: Original strand, 8 - 472
Target Start/End: Original strand, 34395581 - 34396045
Alignment:
| Q |
8 |
ttggtgtttatatttactagaaaaatgtttatggttttgtgttgtcgtttgtaaatgaaccaaaaacatcaatttataaaattttatatacgtcgtggac |
107 |
Q |
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|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| ||| |||||||||| ||| |
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| T |
34395581 |
ttggtgtttatatttactggaaaaatgtttatggttttgtgttgtcgtttgtaaatgaaccaaaaacatcaatttgtaaaagtttctatacgtcgtagac |
34395680 |
T |
|
| Q |
108 |
cacaaaaatgttttgtacatgattgattcgaattataaaatcttaaatgtttctaatcctccaaagcacaagcttttacacagtctggaagtgattctga |
207 |
Q |
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| T |
34395681 |
cacaaaaatgttttgtacatgattgattcgaattataaaatcttaaatgtttcaaatcctccaaagcacaagcttttacacagtctggaagtgattctga |
34395780 |
T |
|
| Q |
208 |
tatataatccgaaatatgcgaatgattttggattatataatccgaatcataccataatccagatagtggtttggttagaaaatatggttaattccatgaa |
307 |
Q |
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|||| |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
34395781 |
tatacaatctgaaatatgcgaatgattttggattatataatccgaatcataccataatccagatagtggtttggttagaaaatatggttaattccatgaa |
34395880 |
T |
|
| Q |
308 |
tgttacatatttatgtgacttgtcagtaatgttgaccacatgtttcagactcaccttgacttcattacggtctatgtttgcatagtgtctataaataccc |
407 |
Q |
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| T |
34395881 |
tgttacatatttatgtgacttgtcagtaatgttgaccacatgtttcagactcaccttgacttcgttacagtctatgtttgcatagtgtctataaataccc |
34395980 |
T |
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| Q |
408 |
attcatatattcttcacaatttcacattccaactcacattctatctttttctttcatacttttct |
472 |
Q |
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| T |
34395981 |
attcatatattcttcacaatttcacattccaactcacattctatctttttctttcatacttttct |
34396045 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 65; E-Value: 3e-28
Query Start/End: Original strand, 468 - 540
Target Start/End: Original strand, 34396118 - 34396190
Alignment:
| Q |
468 |
tttctcattagagtctccttctcccactcatcatcttgtattcccgtctcctccctttagaggatgtgtggga |
540 |
Q |
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| T |
34396118 |
tttctcattagagtctccttctcccactcatcatcttgtattcccatctcctccctttagaggatgtgcggga |
34396190 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 71 - 116
Target Start/End: Complemental strand, 5610870 - 5610825
Alignment:
| Q |
71 |
aaacatcaatttataaaattttatatacgtcgtggaccacaaaaat |
116 |
Q |
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| T |
5610870 |
aaacaccaatttataaaattttatatttgtcatggaccacaaaaat |
5610825 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 60 - 116
Target Start/End: Original strand, 34341227 - 34341283
Alignment:
| Q |
60 |
aaatgaaccaaaaacatcaatttataaaattttatatacgtcgtggaccacaaaaat |
116 |
Q |
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| T |
34341227 |
aaatgaaccaaacacaccaatttatacaagtttttgtgcgtcgtggaccacaaaaat |
34341283 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 31; Significance: 0.00000005; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 416 - 470
Target Start/End: Complemental strand, 4087145 - 4087091
Alignment:
| Q |
416 |
attcttcacaatttcacattccaactcacattctatctttttctttcatactttt |
470 |
Q |
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| T |
4087145 |
attcttcacaatttctcattcaaactcacattctcttcttttctttcttactttt |
4087091 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 420 - 470
Target Start/End: Original strand, 29152517 - 29152567
Alignment:
| Q |
420 |
ttcacaatttcacattccaactcacattctatctttttctttcatactttt |
470 |
Q |
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| T |
29152517 |
ttcacaatttctcattccaagtcacattctctccttttctttcttactttt |
29152567 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 416 - 472
Target Start/End: Original strand, 39166189 - 39166245
Alignment:
| Q |
416 |
attcttcacaatttcacattccaactcacattctatctttttctttcatacttttct |
472 |
Q |
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||||||||||||||| ||||||||||||| || | |||| ||||||| ||| ||||| |
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| T |
39166189 |
attcttcacaatttctcattccaactcactttttttcttcttctttcttacctttct |
39166245 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 416 - 449
Target Start/End: Original strand, 241485 - 241518
Alignment:
| Q |
416 |
attcttcacaatttcacattccaactcacattct |
449 |
Q |
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| T |
241485 |
attcttcacaatttctcattccaactcacattct |
241518 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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