View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10201A_low_30 (Length: 401)
Name: NF10201A_low_30
Description: NF10201A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10201A_low_30 |
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Alignment Details
Target: chr4 (Bit Score: 233; Significance: 1e-128; HSPs: 4)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 233; E-Value: 1e-128
Query Start/End: Original strand, 1 - 253
Target Start/End: Complemental strand, 27737676 - 27737424
Alignment:
| Q |
1 |
gtaggatccattgcaaatcttgaccattggatgagttagacaattttgaatgctcctcaattgtattgcatcaccaagcaccgtgtattgaataattaca |
100 |
Q |
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| T |
27737676 |
gtaggatccattgcaaatcttgaccattggatgagttagacaatgttgaatgctcctcaattgcattgcatcaccaagcactgtgtattgaataattaca |
27737577 |
T |
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| Q |
101 |
cagggaaggttcaatttgaagcaatgaaacacgtgattcatcaccaagcaccaatgaaacatggaatttaaagggacttactccaacaaggacaaggcag |
200 |
Q |
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| T |
27737576 |
tagggaaggttcaatttgaagcaatgaaacatgtgattcatcaccaagcaccaatgaaacatggaatttaaagggacttactccaacaaggacaaggcag |
27737477 |
T |
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| Q |
201 |
tgaatatgaaacaaaattgaattcttataaattttttatttgtgttttagatg |
253 |
Q |
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| T |
27737476 |
tgaatatgaaacaaaattgaattcttataaattttttatttgtgttttagatg |
27737424 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 88; E-Value: 3e-42
Query Start/End: Original strand, 87 - 253
Target Start/End: Complemental strand, 27725911 - 27725727
Alignment:
| Q |
87 |
attgaataattacacagggaaggttcaatttgaagcaatgaaacacgtgattcatcaccaagcaccaatga---aacat--------------ggaattt |
169 |
Q |
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| T |
27725911 |
attgaataattacatagggaaggttcaattcgaagcaatgaaacatgtgattcatcacaaagcaccatttacttaacatcgtttgagttattaggaattt |
27725812 |
T |
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| Q |
170 |
aaagggact-tactccaacaaggacaaggcagtgaatatgaaacaaaattgaattcttataaattttttatttgtgttttagatg |
253 |
Q |
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| T |
27725811 |
aaagggactatactccaacaaggacaaggcagtgaatatgaaacaaaattgaattcttataaatattttatttgtgttttagatg |
27725727 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 66; E-Value: 5e-29
Query Start/End: Original strand, 322 - 395
Target Start/End: Complemental strand, 27737360 - 27737288
Alignment:
| Q |
322 |
atatatgtgcctatttaatggctgctaacttcgcatgatgttattatttcaagtggacttttgcatgtgcttgt |
395 |
Q |
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| T |
27737360 |
atatatgtgcctatttaatggctgctaacttcgcatgatgttattatttc-agtggacttttgcatgtgcttgt |
27737288 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 322 - 391
Target Start/End: Complemental strand, 27752815 - 27752746
Alignment:
| Q |
322 |
atatatgtgcctatttaatggctgctaacttcgcatgatgttattatttcaagtggacttttgcatgtgc |
391 |
Q |
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| T |
27752815 |
atatgtgtgcctatttaatcgctgctaacttcgcatgaatttattatttcaattggacttttgcatgtgc |
27752746 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 46; Significance: 4e-17; HSPs: 3)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 331 - 392
Target Start/End: Original strand, 3252221 - 3252282
Alignment:
| Q |
331 |
cctatttaatggctgctaacttcgcatgatgttattatttcaagtggacttttgcatgtgct |
392 |
Q |
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| T |
3252221 |
cctatttaatcgctgctaacttcgcatgatgttatgatttctagtggactttttcatgtgct |
3252282 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 332 - 392
Target Start/End: Original strand, 3263288 - 3263348
Alignment:
| Q |
332 |
ctatttaatggctgctaacttcgcatgatgttattatttcaagtggacttttgcatgtgct |
392 |
Q |
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||||||||| |||||| |||||||||||||||||||||||||||| |||||||||| |||| |
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| T |
3263288 |
ctatttaatcgctgcttacttcgcatgatgttattatttcaagtgaacttttgcatatgct |
3263348 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 342 - 392
Target Start/End: Complemental strand, 2257987 - 2257937
Alignment:
| Q |
342 |
gctgctaacttcgcatgatgttattatttcaagtggacttttgcatgtgct |
392 |
Q |
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||||||||| || |||||||||||||||||||||||||||||||||||||| |
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| T |
2257987 |
gctgctaacatcacatgatgttattatttcaagtggacttttgcatgtgct |
2257937 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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