View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF10201A_low_301 (Length: 226)

Name: NF10201A_low_301
Description: NF10201A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF10201A_low_301
NF10201A_low_301
[»] chr6 (3 HSPs)
chr6 (1-58)||(24125247-24125304)
chr6 (174-221)||(24124424-24124471)
chr6 (83-129)||(24124500-24124546)
[»] chr8 (1 HSPs)
chr8 (1-58)||(45163379-45163435)


Alignment Details
Target: chr6 (Bit Score: 50; Significance: 9e-20; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 50; E-Value: 9e-20
Query Start/End: Original strand, 1 - 58
Target Start/End: Complemental strand, 24125304 - 24125247
Alignment:
Q  1 gtgttcacttttcttattttgaaagttttcaaatgttcttttcagttaggttgcttat 58  Q
    |||||||||||||||||||||||||||| |||||||||||||||||||| ||||||||    
T  24125304 gtgttcacttttcttattttgaaagtttccaaatgttcttttcagttagattgcttat 24125247  T

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Target: chr6; HSP #2
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 174 - 221
Target Start/End: Complemental strand, 24124471 - 24124424
Alignment:
Q  174 ttatcttcacagtttggtatgcaatttatgcatggctacggatggtgt 221  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||    
T  24124471 ttatcttcacagtttggtatgcaatttatgcatggctacggatggtgt 24124424  T

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Target: chr6; HSP #3
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 83 - 129
Target Start/End: Complemental strand, 24124546 - 24124500
Alignment:
Q  83 tttggcgactcttgtatcatatctcttctttgttttatatatataat 129  Q
    |||||||||||||||||| ||||||||||||||||||||||||||||    
T  24124546 tttggcgactcttgtatcgtatctcttctttgttttatatatataat 24124500  T

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Target: chr8 (Bit Score: 34; Significance: 0.0000000003; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 1 - 58
Target Start/End: Original strand, 45163379 - 45163435
Alignment:
Q  1 gtgttcacttttcttattttgaaagttttcaaatgttcttttcagttaggttgcttat 58  Q
    ||||||||||| |||||||||||||||||||||| ||||||||| ||| | |||||||    
T  45163379 gtgttcactttacttattttgaaagttttcaaat-ttcttttcaattacgctgcttat 45163435  T

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