View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10201A_low_305 (Length: 225)
Name: NF10201A_low_305
Description: NF10201A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10201A_low_305 |
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Alignment Details
Target: chr2 (Bit Score: 145; Significance: 2e-76; HSPs: 5)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 145; E-Value: 2e-76
Query Start/End: Original strand, 21 - 210
Target Start/End: Original strand, 43011323 - 43011512
Alignment:
| Q |
21 |
atgatgtagtagtggggagggcatggctgacgcaaattggatgtacatgcattgattgggttgagnnnnnnntgcgtttcgactatcaaggcgaatggat |
120 |
Q |
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| T |
43011323 |
atgatctagtattggggatggcatggctgacacaaattggatgtacttgcatcgattgggttgagaaaaaaatgcgtttcgactatcaaggcgaatggat |
43011422 |
T |
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| Q |
121 |
agagatcagaggaattcgtactagagagtgcactccattacaaaactatgttgatgaaaatcattttggccagttgcattgtgatgtcca |
210 |
Q |
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| T |
43011423 |
agagatcagaggaattcgtactagagagtgcactccattacaaaactatgttgatgaaaatcattttggccagttgcattgtgatgtcca |
43011512 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 145; E-Value: 2e-76
Query Start/End: Original strand, 21 - 210
Target Start/End: Original strand, 43013620 - 43013809
Alignment:
| Q |
21 |
atgatgtagtagtggggagggcatggctgacgcaaattggatgtacatgcattgattgggttgagnnnnnnntgcgtttcgactatcaaggcgaatggat |
120 |
Q |
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| T |
43013620 |
atgatctagtattggggatggcatggctgacacaaattggatgtacttgcatcgattgggttgagaaaaaaatgcgtttcgactatcaaggcgaatggat |
43013719 |
T |
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| Q |
121 |
agagatcagaggaattcgtactagagagtgcactccattacaaaactatgttgatgaaaatcattttggccagttgcattgtgatgtcca |
210 |
Q |
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| T |
43013720 |
agagatcagaggaattcgtactagagagtgcactccattacaaaactatgttgatgaaaatcattttggccagttgcattgtgatgtcca |
43013809 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 109; E-Value: 5e-55
Query Start/End: Original strand, 21 - 210
Target Start/End: Complemental strand, 25203168 - 25202979
Alignment:
| Q |
21 |
atgatgtagtagtggggagggcatggctgacgcaaattggatgtacatgcattgattgggttgagnnnnnnntgcgtttcgactatcaaggcgaatggat |
120 |
Q |
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| T |
25203168 |
atgatctagtattggggatggcatgactgacacaaattggatgtacttgcatcgattgggttgagaaaaaaatgtgtttcgactatcagggtgaatggat |
25203069 |
T |
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| Q |
121 |
agagatcagaggaattcgtactagagagtgcactccattacaaaactatgttgatgaaaatcattttggccagttgcattgtgatgtcca |
210 |
Q |
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| T |
25203068 |
tgagatcataggtattcgtactagagagtgcactccattacaaaactatgttgatgaaaatcattttggttagttgcattgtgatgtcca |
25202979 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 69; E-Value: 4e-31
Query Start/End: Original strand, 138 - 210
Target Start/End: Original strand, 35075408 - 35075480
Alignment:
| Q |
138 |
gtactagagagtgcactccattacaaaactatgttgatgaaaatcattttggccagttgcattgtgatgtcca |
210 |
Q |
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| T |
35075408 |
gtactagagagtgcactccattacaaaactatgttgatgaaaatcattttggtcagttgcattgtgatgtcca |
35075480 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #5
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 21 - 66
Target Start/End: Original strand, 35075366 - 35075411
Alignment:
| Q |
21 |
atgatgtagtagtggggagggcatggctgacgcaaattggatgtac |
66 |
Q |
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| T |
35075366 |
atgatctagtattggggatggcatggctgacacaaattggatgtac |
35075411 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 145; Significance: 2e-76; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 145; E-Value: 2e-76
Query Start/End: Original strand, 21 - 210
Target Start/End: Complemental strand, 25676045 - 25675856
Alignment:
| Q |
21 |
atgatgtagtagtggggagggcatggctgacgcaaattggatgtacatgcattgattgggttgagnnnnnnntgcgtttcgactatcaaggcgaatggat |
120 |
Q |
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| T |
25676045 |
atgatctagtattggggatggcatggctgacacaaattggatgtacttgcatcgattgggttgagaaaaaaatgcgtttcgactatcaaggcgaatggat |
25675946 |
T |
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| Q |
121 |
agagatcagaggaattcgtactagagagtgcactccattacaaaactatgttgatgaaaatcattttggccagttgcattgtgatgtcca |
210 |
Q |
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| T |
25675945 |
agagatcagaggaattcgtactagagagtgcactccattacaaaactatgttgatgaaaatcattttggccagttgcattgtgatgtcca |
25675856 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 91; Significance: 3e-44; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 91; E-Value: 3e-44
Query Start/End: Original strand, 21 - 210
Target Start/End: Complemental strand, 15090357 - 15090163
Alignment:
| Q |
21 |
atgatgtagtagtggggagggcatggctgacgcaaattggatgtacatgcattgattgggttgagnnnnnnnt-------gcgtttcgactatcaaggcg |
113 |
Q |
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| T |
15090357 |
atgatctagtattggggatggcatggctgacacaaattggatgtacttgcatcgattgggttgagaaaaaaaaaaaaaaagtgtttcgactatcagggtg |
15090258 |
T |
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| Q |
114 |
aatggatagagatcagaggaattcgtactagagagtgcactccattacaaaactatgttgatgaaaatcattttggccagttgcattgtgatgtcca |
210 |
Q |
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| T |
15090257 |
aatggattgagatcagaggaattcgtactagag--tgcaatccattacaaaactatgttgatgaaaatcattttggccagttgcattgtgatgtcca |
15090163 |
T |
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