View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF10201A_low_31 (Length: 398)
Name: NF10201A_low_31
Description: NF10201A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10201A_low_31 |
 | |
|
Alignment Details
Target: chr3 (Bit Score: 347; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 347; E-Value: 0
Query Start/End: Original strand, 16 - 392
Target Start/End: Complemental strand, 49783644 - 49783271
Alignment:
| Q |
16 |
aagaatatatcacaaaactaatttgtgcaagaactaaatgattaataattatgtacaattttactaattaattgaattttcacatggagaaacaaccgtc |
115 |
Q |
| |
|
|||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |
|
|
| T |
49783644 |
aagaatatatcacaaagctaatttgtgcaagaactaaatgattaataattatgtacaattttactaattaattgaattttcacatggagaaacaactgtc |
49783545 |
T |
|
| Q |
116 |
cctattggttttaagtttgacggacattgagagtggtggagcaatcttagaggtggaggagcgaacagcctcatatctccgacgtgctgctggccgtgga |
215 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| ||||||||||||||||||||||||||||||| |
|
|
| T |
49783544 |
cctattggttttaagtttgacggacattgagagtggtggagcaatcttagaggtggag---cgaacagtctcatatctccgacgtgctgctggccgtgga |
49783448 |
T |
|
| Q |
216 |
agattctctggcacgatggtttcgaggggattgtttccttgccaagaggggcacatccttttctggctccatttggccgcaccaccaaccaaaaacacat |
315 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
49783447 |
agattctctggcacgatggtttcgaggggattgtttccttgccaagaggggcacatccttttctggctccatttggccgcaccaccaaccaaaaacacat |
49783348 |
T |
|
| Q |
316 |
gctcatcatcatcatctattgaatttgacatggccaccaacatggtattctccttagccatagcttcatgttccaat |
392 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |
|
|
| T |
49783347 |
gctcatcatcatcatctattgaatttgacatggccaccaacatggtattctccttagccacagcttcatgttccaat |
49783271 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University