View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10201A_low_318 (Length: 220)
Name: NF10201A_low_318
Description: NF10201A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10201A_low_318 |
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Alignment Details
Target: chr5 (Bit Score: 137; Significance: 1e-71; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 137; E-Value: 1e-71
Query Start/End: Original strand, 50 - 214
Target Start/End: Original strand, 6236483 - 6236647
Alignment:
| Q |
50 |
atcaagcgaagaaattcaataaaactagagagggccagaacccataacaaggtctacatccggaagaaacaaaaacagaaaaggcagaattacatcaaaa |
149 |
Q |
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| T |
6236483 |
atcaagcgaagaaattcaataaaactgaagagggccagaacccataacaaagtctacatcaggaagaaacaaaaatagaaaaggcagaattacatcaaaa |
6236582 |
T |
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| Q |
150 |
tcctataataaggaagtcctgaaccctctctagagagaaaagaagcaataaagctaggtggtgag |
214 |
Q |
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| T |
6236583 |
tcctataataaggaagtcctgaaccctctctagagagaaaagaagcaataaagcagggtggtgag |
6236647 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 4 - 38
Target Start/End: Complemental strand, 14706529 - 14706495
Alignment:
| Q |
4 |
gagtttggtgttgtagtgaatgaaaatttgaatgg |
38 |
Q |
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|||| |||||||||||||||||||||||||||||| |
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| T |
14706529 |
gagtatggtgttgtagtgaatgaaaatttgaatgg |
14706495 |
T |
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