View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10201A_low_320 (Length: 219)
Name: NF10201A_low_320
Description: NF10201A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10201A_low_320 |
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Alignment Details
Target: chr2 (Bit Score: 173; Significance: 3e-93; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 173; E-Value: 3e-93
Query Start/End: Original strand, 12 - 200
Target Start/End: Original strand, 40724382 - 40724570
Alignment:
| Q |
12 |
acatcatcataaccgacttcatcaagcctttcttcatcctctcttttcacgggttccgcctcgcagaagacctcagtgtctggagcaaccacacagaact |
111 |
Q |
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| T |
40724382 |
acatcatcataaccgacttcatcaagcctttcttcatcctctcttttcacgggttccccctcgcagaagacctcagtgtctggagcaaccgcacagaact |
40724481 |
T |
|
| Q |
112 |
ccccaggatcagtttcattgaccttaaattctacacttctcatccctccccgcacaagaaatagatctccttttctgacaggacgataa |
200 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |||| |
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| T |
40724482 |
ccccaggatcagtttcattgaccttaaattctacacttctcatccctccccgcacaagaaatagatctccttttctgaccggacaataa |
40724570 |
T |
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Target: chr2; HSP #2
Raw Score: 133; E-Value: 3e-69
Query Start/End: Original strand, 12 - 200
Target Start/End: Complemental strand, 40665672 - 40665484
Alignment:
| Q |
12 |
acatcatcataaccgacttcatcaagcctttcttcatcctctcttttcacgggttccgcctcgcagaagacctcagtgtctggagcaaccacacagaact |
111 |
Q |
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|||||||||||||| ||||||||||| ||||||||||| ||||||||||| |||||| |||| ||||||| ||||||||||||||||||| |||| ||| |
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| T |
40665672 |
acatcatcataaccaacttcatcaagtctttcttcatcatctcttttcacaggttccccctcacagaagatctcagtgtctggagcaaccgtacagtact |
40665573 |
T |
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| Q |
112 |
ccccaggatcagtttcattgaccttaaattctacacttctcatccctccccgcacaagaaatagatctccttttctgacaggacgataa |
200 |
Q |
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| T |
40665572 |
caccaggatcagtttcaatgaccttaaactctacacttctcatccctccccgcacaagaaatagatctccttttctgacgggacgataa |
40665484 |
T |
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