View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF10201A_low_321 (Length: 219)

Name: NF10201A_low_321
Description: NF10201A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF10201A_low_321
NF10201A_low_321
[»] chr6 (4 HSPs)
chr6 (81-144)||(10070299-10070362)
chr6 (135-172)||(5172125-5172162)
chr6 (138-183)||(26320585-26320630)
chr6 (138-174)||(32149141-32149177)
[»] chr4 (8 HSPs)
chr4 (138-179)||(241406-241447)
chr4 (138-183)||(37463516-37463561)
chr4 (138-185)||(54857637-54857684)
chr4 (137-179)||(9913897-9913939)
chr4 (138-179)||(10303533-10303574)
chr4 (137-174)||(31604314-31604351)
chr4 (138-179)||(35287529-35287570)
chr4 (138-174)||(31780748-31780784)
[»] chr2 (6 HSPs)
chr2 (138-183)||(21497661-21497706)
chr2 (137-179)||(3752796-3752838)
chr2 (138-179)||(17736791-17736832)
chr2 (138-183)||(32957565-32957610)
chr2 (138-174)||(4056793-4056829)
chr2 (138-174)||(27314870-27314906)
[»] chr1 (5 HSPs)
chr1 (138-179)||(29739335-29739376)
chr1 (138-179)||(13673543-13673584)
chr1 (138-175)||(21015964-21016001)
chr1 (138-183)||(26498055-26498100)
chr1 (138-183)||(50595905-50595950)
[»] chr7 (7 HSPs)
chr7 (138-185)||(46207752-46207799)
chr7 (138-180)||(13044164-13044206)
chr7 (138-179)||(580948-580989)
chr7 (138-179)||(47589575-47589616)
chr7 (138-174)||(13955483-13955519)
chr7 (137-177)||(32862619-32862659)
chr7 (138-182)||(35666298-35666342)
[»] chr3 (5 HSPs)
chr3 (139-174)||(53705650-53705685)
chr3 (138-179)||(7868720-7868761)
chr3 (138-179)||(52575945-52575986)
chr3 (138-174)||(13800670-13800706)
chr3 (138-174)||(41737799-41737835)
[»] chr5 (2 HSPs)
chr5 (137-179)||(22619872-22619914)
chr5 (138-174)||(18391603-18391639)
[»] scaffold0098 (1 HSPs)
scaffold0098 (138-179)||(5423-5464)
[»] scaffold0006 (1 HSPs)
scaffold0006 (138-179)||(171157-171198)
[»] scaffold0072 (1 HSPs)
scaffold0072 (138-174)||(25698-25734)
[»] chr8 (3 HSPs)
chr8 (138-174)||(9656019-9656055)
chr8 (138-174)||(32878664-32878700)
chr8 (143-183)||(35103100-35103140)


Alignment Details
Target: chr6 (Bit Score: 48; Significance: 1e-18; HSPs: 4)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 81 - 144
Target Start/End: Complemental strand, 10070362 - 10070299
Alignment:
Q  81 atcagttcttagcatccatttagatatcgatgaagaaacctccattctcatgataatatatttt 144  Q
    ||||||||||||||||||||||||||||||| |||||||||| ||| |||||||||||| ||||    
T  10070362 atcagttcttagcatccatttagatatcgataaagaaacctctattttcatgataatatgtttt 10070299  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 135 - 172
Target Start/End: Complemental strand, 5172162 - 5172125
Alignment:
Q  135 aatatattttatgcattgttcttaccaaccgagctaag 172  Q
    ||||||||||||||||||| | ||||||||||||||||    
T  5172162 aatatattttatgcattgtccataccaaccgagctaag 5172125  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 138 - 183
Target Start/End: Original strand, 26320585 - 26320630
Alignment:
Q  138 atattttatgcattgttcttaccaaccgagctaagctaacgatgac 183  Q
    |||||||||||||||| | ||||||| |||||||||| ||||||||    
T  26320585 atattttatgcattgtccataccaactgagctaagctcacgatgac 26320630  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 138 - 174
Target Start/End: Complemental strand, 32149177 - 32149141
Alignment:
Q  138 atattttatgcattgttcttaccaaccgagctaagct 174  Q
    |||| ||||||||||||||||||||| ||||||||||    
T  32149177 atatattatgcattgttcttaccaactgagctaagct 32149141  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 34; Significance: 0.0000000003; HSPs: 8)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 138 - 179
Target Start/End: Original strand, 241406 - 241447
Alignment:
Q  138 atattttatgcattgttcttaccaaccgagctaagctaacga 179  Q
    |||||||||||||||||| |||||||||||||||||| ||||    
T  241406 atattttatgcattgttcataccaaccgagctaagcttacga 241447  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 138 - 183
Target Start/End: Complemental strand, 37463561 - 37463516
Alignment:
Q  138 atattttatgcattgttcttaccaaccgagctaagctaacgatgac 183  Q
    |||| ||||||||||||| |||||||||||||||||| ||||||||    
T  37463561 atatattatgcattgttcataccaaccgagctaagctcacgatgac 37463516  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 138 - 185
Target Start/End: Original strand, 54857637 - 54857684
Alignment:
Q  138 atattttatgcattgttcttaccaaccgagctaagctaacgatgaccg 185  Q
    |||||||||||||||||  |||||||||||||||||| |||| |||||    
T  54857637 atattttatgcattgtttataccaaccgagctaagctcacgaggaccg 54857684  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 137 - 179
Target Start/End: Complemental strand, 9913939 - 9913897
Alignment:
Q  137 tatattttatgcattgttcttaccaaccgagctaagctaacga 179  Q
    ||||||||||||||||||| ||||||| |||||||||| ||||    
T  9913939 tatattttatgcattgttcataccaactgagctaagctcacga 9913897  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 138 - 179
Target Start/End: Original strand, 10303533 - 10303574
Alignment:
Q  138 atattttatgcattgttcttaccaaccgagctaagctaacga 179  Q
    |||||||||||||||| ||||||||| |||||||||| ||||    
T  10303533 atattttatgcattgtccttaccaactgagctaagctcacga 10303574  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 137 - 174
Target Start/End: Original strand, 31604314 - 31604351
Alignment:
Q  137 tatattttatgcattgttcttaccaaccgagctaagct 174  Q
    ||||||||||||||||||||||||||| ||| ||||||    
T  31604314 tatattttatgcattgttcttaccaactgagttaagct 31604351  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 138 - 179
Target Start/End: Original strand, 35287529 - 35287570
Alignment:
Q  138 atattttatgcattgttcttaccaaccgagctaagctaacga 179  Q
    |||||||||||||||||| ||||||| |||||||||| ||||    
T  35287529 atattttatgcattgttcataccaactgagctaagctcacga 35287570  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 138 - 174
Target Start/End: Complemental strand, 31780784 - 31780748
Alignment:
Q  138 atattttatgcattgttcttaccaaccgagctaagct 174  Q
    |||||||||||||||| ||||||||| ||||||||||    
T  31780784 atattttatgcattgtccttaccaactgagctaagct 31780748  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 34; Significance: 0.0000000003; HSPs: 6)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 138 - 183
Target Start/End: Complemental strand, 21497706 - 21497661
Alignment:
Q  138 atattttatgcattgttcttaccaaccgagctaagctaacgatgac 183  Q
    |||| ||||||||||||||||||||||||| |||||| ||||||||    
T  21497706 atatattatgcattgttcttaccaaccgagttaagctcacgatgac 21497661  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 137 - 179
Target Start/End: Original strand, 3752796 - 3752838
Alignment:
Q  137 tatattttatgcattgttcttaccaaccgagctaagctaacga 179  Q
    ||||||||||||||||||| || ||||||||||||||| ||||    
T  3752796 tatattttatgcattgttcataacaaccgagctaagctcacga 3752838  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 138 - 179
Target Start/End: Complemental strand, 17736832 - 17736791
Alignment:
Q  138 atattttatgcattgttcttaccaaccgagctaagctaacga 179  Q
    |||||||||||||||||| ||||||| |||||||||| ||||    
T  17736832 atattttatgcattgttcataccaactgagctaagctcacga 17736791  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 138 - 183
Target Start/End: Original strand, 32957565 - 32957610
Alignment:
Q  138 atattttatgcattgttcttaccaaccgagctaagctaacgatgac 183  Q
    |||| ||||||||||||| ||||||||||||||| || ||||||||    
T  32957565 atatattatgcattgttcataccaaccgagctaaactcacgatgac 32957610  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 138 - 174
Target Start/End: Complemental strand, 4056829 - 4056793
Alignment:
Q  138 atattttatgcattgttcttaccaaccgagctaagct 174  Q
    |||| ||||||||||| ||||||||||||||||||||    
T  4056829 atatattatgcattgtccttaccaaccgagctaagct 4056793  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 138 - 174
Target Start/End: Complemental strand, 27314906 - 27314870
Alignment:
Q  138 atattttatgcattgttcttaccaaccgagctaagct 174  Q
    |||||||||||||||||||||||||| ||| ||||||    
T  27314906 atattttatgcattgttcttaccaactgagttaagct 27314870  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 34; Significance: 0.0000000003; HSPs: 5)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 138 - 179
Target Start/End: Complemental strand, 29739376 - 29739335
Alignment:
Q  138 atattttatgcattgttcttaccaaccgagctaagctaacga 179  Q
    |||||||||||||||| ||||||||| |||||||||||||||    
T  29739376 atattttatgcattgtccttaccaactgagctaagctaacga 29739335  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 138 - 179
Target Start/End: Complemental strand, 13673584 - 13673543
Alignment:
Q  138 atattttatgcattgttcttaccaaccgagctaagctaacga 179  Q
    ||||||||||||||||||  ||||||||||||||||| ||||    
T  13673584 atattttatgcattgttcaaaccaaccgagctaagctcacga 13673543  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 138 - 175
Target Start/End: Complemental strand, 21016001 - 21015964
Alignment:
Q  138 atattttatgcattgttcttaccaaccgagctaagcta 175  Q
    |||| ||||||||||||||||||||| |||||||||||    
T  21016001 atatattatgcattgttcttaccaactgagctaagcta 21015964  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 138 - 183
Target Start/End: Complemental strand, 26498100 - 26498055
Alignment:
Q  138 atattttatgcattgttcttaccaaccgagctaagctaacgatgac 183  Q
    |||||||||||||||| | ||||||| |||||||||| ||||||||    
T  26498100 atattttatgcattgtccgtaccaactgagctaagctcacgatgac 26498055  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 138 - 183
Target Start/End: Original strand, 50595905 - 50595950
Alignment:
Q  138 atattttatgcattgttcttaccaaccgagctaagctaacgatgac 183  Q
    |||||||||||||||||| ||||||  |||||||||| ||||||||    
T  50595905 atattttatgcattgttcataccaattgagctaagctcacgatgac 50595950  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 32; Significance: 0.000000005; HSPs: 7)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 138 - 185
Target Start/End: Complemental strand, 46207799 - 46207752
Alignment:
Q  138 atattttatgcattgttcttaccaaccgagctaagctaacgatgaccg 185  Q
    |||||||||||||||||| ||||||| |||||||||| |||| |||||    
T  46207799 atattttatgcattgttcataccaactgagctaagctcacgaggaccg 46207752  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 138 - 180
Target Start/End: Original strand, 13044164 - 13044206
Alignment:
Q  138 atattttatgcattgttcttaccaaccgagctaagctaacgat 180  Q
    |||||||||||||||| ||||||||| |||||||||| |||||    
T  13044164 atattttatgcattgtccttaccaactgagctaagctcacgat 13044206  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 138 - 179
Target Start/End: Original strand, 580948 - 580989
Alignment:
Q  138 atattttatgcattgttcttaccaaccgagctaagctaacga 179  Q
    |||||||||||||||| | |||||||||||||||||| ||||    
T  580948 atattttatgcattgtccataccaaccgagctaagctcacga 580989  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 138 - 179
Target Start/End: Original strand, 47589575 - 47589616
Alignment:
Q  138 atattttatgcattgttcttaccaaccgagctaagctaacga 179  Q
    |||||||||||||||||| ||||||| |||||||||| ||||    
T  47589575 atattttatgcattgttcataccaactgagctaagctcacga 47589616  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 138 - 174
Target Start/End: Complemental strand, 13955519 - 13955483
Alignment:
Q  138 atattttatgcattgttcttaccaaccgagctaagct 174  Q
    |||||||||||||||||| ||||||| ||||||||||    
T  13955519 atattttatgcattgttcataccaactgagctaagct 13955483  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 137 - 177
Target Start/End: Complemental strand, 32862659 - 32862619
Alignment:
Q  137 tatattttatgcattgttcttaccaaccgagctaagctaac 177  Q
    |||||||||||| |||||||||||||| ||| |||||||||    
T  32862659 tatattttatgcgttgttcttaccaactgagttaagctaac 32862619  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 138 - 182
Target Start/End: Complemental strand, 35666342 - 35666298
Alignment:
Q  138 atattttatgcattgttcttaccaaccgagctaagctaacgatga 182  Q
    |||| ||||||||||| ||||||||||||| |||||| |||||||    
T  35666342 atatattatgcattgtccttaccaaccgagttaagctcacgatga 35666298  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 32; Significance: 0.000000005; HSPs: 5)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 139 - 174
Target Start/End: Original strand, 53705650 - 53705685
Alignment:
Q  139 tattttatgcattgttcttaccaaccgagctaagct 174  Q
    ||||||||||||||||||||||||| ||||||||||    
T  53705650 tattttatgcattgttcttaccaactgagctaagct 53705685  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 138 - 179
Target Start/End: Complemental strand, 7868761 - 7868720
Alignment:
Q  138 atattttatgcattgttcttaccaaccgagctaagctaacga 179  Q
    |||| ||||||||||||||||||||| |||||||||| ||||    
T  7868761 atatattatgcattgttcttaccaactgagctaagctcacga 7868720  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 138 - 179
Target Start/End: Complemental strand, 52575986 - 52575945
Alignment:
Q  138 atattttatgcattgttcttaccaaccgagctaagctaacga 179  Q
    |||||||||||||||||| ||||||| |||||||||| ||||    
T  52575986 atattttatgcattgttcataccaactgagctaagcttacga 52575945  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 138 - 174
Target Start/End: Complemental strand, 13800706 - 13800670
Alignment:
Q  138 atattttatgcattgttcttaccaaccgagctaagct 174  Q
    |||| ||||||||||||||||||||| ||||||||||    
T  13800706 atatattatgcattgttcttaccaactgagctaagct 13800670  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 138 - 174
Target Start/End: Complemental strand, 41737835 - 41737799
Alignment:
Q  138 atattttatgcattgttcttaccaaccgagctaagct 174  Q
    |||||||||||||||| ||||||||| ||||||||||    
T  41737835 atattttatgcattgtccttaccaactgagctaagct 41737799  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 31; Significance: 0.00000002; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 137 - 179
Target Start/End: Complemental strand, 22619914 - 22619872
Alignment:
Q  137 tatattttatgcattgttcttaccaaccgagctaagctaacga 179  Q
    ||||||||||||||||||| ||||||| |||||||||| ||||    
T  22619914 tatattttatgcattgttcataccaactgagctaagctcacga 22619872  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 138 - 174
Target Start/End: Complemental strand, 18391639 - 18391603
Alignment:
Q  138 atattttatgcattgttcttaccaaccgagctaagct 174  Q
    |||||||||||||||| ||||||||| ||||||||||    
T  18391639 atattttatgcattgtccttaccaactgagctaagct 18391603  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0098 (Bit Score: 30; Significance: 0.00000007; HSPs: 1)
Name: scaffold0098
Description:

Target: scaffold0098; HSP #1
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 138 - 179
Target Start/End: Complemental strand, 5464 - 5423
Alignment:
Q  138 atattttatgcattgttcttaccaaccgagctaagctaacga 179  Q
    |||| ||||||||||||||||||||| |||||||||| ||||    
T  5464 atatattatgcattgttcttaccaactgagctaagctcacga 5423  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0006 (Bit Score: 30; Significance: 0.00000007; HSPs: 1)
Name: scaffold0006
Description:

Target: scaffold0006; HSP #1
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 138 - 179
Target Start/End: Complemental strand, 171198 - 171157
Alignment:
Q  138 atattttatgcattgttcttaccaaccgagctaagctaacga 179  Q
    ||||||||||||||||||  ||||||||||||||||| ||||    
T  171198 atattttatgcattgttcaaaccaaccgagctaagctcacga 171157  T

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Target: scaffold0072 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: scaffold0072
Description:

Target: scaffold0072; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 138 - 174
Target Start/End: Complemental strand, 25734 - 25698
Alignment:
Q  138 atattttatgcattgttcttaccaaccgagctaagct 174  Q
    |||| ||||||||||||||||||||| ||||||||||    
T  25734 atatattatgcattgttcttaccaactgagctaagct 25698  T

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Target: chr8 (Bit Score: 29; Significance: 0.0000003; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 138 - 174
Target Start/End: Original strand, 9656019 - 9656055
Alignment:
Q  138 atattttatgcattgttcttaccaaccgagctaagct 174  Q
    |||||||||||||||| ||||||||| ||||||||||    
T  9656019 atattttatgcattgtccttaccaactgagctaagct 9656055  T

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Target: chr8; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 138 - 174
Target Start/End: Complemental strand, 32878700 - 32878664
Alignment:
Q  138 atattttatgcattgttcttaccaaccgagctaagct 174  Q
    |||| ||||||||||||||||||||| ||||||||||    
T  32878700 atatattatgcattgttcttaccaactgagctaagct 32878664  T

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Target: chr8; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 143 - 183
Target Start/End: Complemental strand, 35103140 - 35103100
Alignment:
Q  143 ttatgcattgttcttaccaaccgagctaagctaacgatgac 183  Q
    ||||||||||||| ||||||| |||||||||| ||||||||    
T  35103140 ttatgcattgttcataccaactgagctaagctcacgatgac 35103100  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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