View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF10201A_low_328 (Length: 216)

Name: NF10201A_low_328
Description: NF10201A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF10201A_low_328
NF10201A_low_328
[»] chr4 (2 HSPs)
chr4 (23-125)||(29358359-29358459)
chr4 (23-110)||(29342291-29342380)


Alignment Details
Target: chr4 (Bit Score: 75; Significance: 1e-34; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 23 - 125
Target Start/End: Original strand, 29358359 - 29358459
Alignment:
Q  23 ctttatgattcttgatcaaagtttcactcaagattctagttgaatacatttttacttttccaataatttttgttactcatcttccatgacatgattccga 122  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| ||||| |||||| | |||||||||    
T  29358359 ctttatgattcttgatcaaagtttcactcaagattctagttgaatacatttttactttttcaataatttttgtta-tcatcctccatggc-tgattccga 29358456  T
Q  123 ctt 125  Q
    |||    
T  29358457 ctt 29358459  T

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Target: chr4; HSP #2
Raw Score: 57; E-Value: 6e-24
Query Start/End: Original strand, 23 - 110
Target Start/End: Original strand, 29342291 - 29342380
Alignment:
Q  23 ctttatgattcttgatcaaagtttcactcaagattctagttgaataca---tttttacttttccaataatttttgttactcatcttccatg 110  Q
    |||||| |||||||||||||||||||||||||||||||||| ||||||   ||||| ||||||||||||||||||||| ||||||||||||    
T  29342291 ctttattattcttgatcaaagtttcactcaagattctagttaaatacatttttttttcttttccaataatttttgtta-tcatcttccatg 29342380  T

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