View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10201A_low_335 (Length: 212)
Name: NF10201A_low_335
Description: NF10201A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10201A_low_335 |
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Alignment Details
Target: chr6 (Bit Score: 150; Significance: 2e-79; HSPs: 7)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 150; E-Value: 2e-79
Query Start/End: Original strand, 12 - 193
Target Start/End: Original strand, 7140355 - 7140536
Alignment:
| Q |
12 |
catcatcgtccaccacaaggtcaaaggaccctaaaaacaagtaggttaatgctggaaaattcaaagaatttggaaataatgttcgttgaggcaaagcaac |
111 |
Q |
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||||||||||||| ||| |||||||||||||||||| ||||||||||||||||||||||||||||||||| ||||||||||||||||| | |||||||| |
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| T |
7140355 |
catcatcgtccacaccaaagtcaaaggaccctaaaaagaagtaggttaatgctggaaaattcaaagaattttgaaataatgttcgttgacgaaaagcaac |
7140454 |
T |
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| Q |
112 |
acaaatgtgaagagatgttaaagtgtcacatgaaaagaagtaagaccgaagatgttgaacttttctgacatcgattcgtact |
193 |
Q |
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| T |
7140455 |
acaaatgtgaagagatgttaaagtgtcacatgaaaagaagtaagactgaagatgttgaacttttctgacatcgattcgtact |
7140536 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 144; E-Value: 7e-76
Query Start/End: Original strand, 12 - 191
Target Start/End: Original strand, 8656270 - 8656449
Alignment:
| Q |
12 |
catcatcgtccaccacaaggtcaaaggaccctaaaaacaagtaggttaatgctggaaaattcaaagaatttggaaataatgttcgttgaggcaaagcaac |
111 |
Q |
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||||||||||||| ||| |||||||||||||||||| |||||||||||||||||||| |||||||||||||||||||||||||||||||| |||||||| |
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| T |
8656270 |
catcatcgtccacaccaaagtcaaaggaccctaaaaataagtaggttaatgctggaaatttcaaagaatttggaaataatgttcgttgaggaaaagcaac |
8656369 |
T |
|
| Q |
112 |
acaaatgtgaagagatgttaaagtgtcacatgaaaagaagtaagaccgaagatgttgaacttttctgacatcgattcgta |
191 |
Q |
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| T |
8656370 |
acaaatgtgaagagatgttaaagtgtcacatgaaaagaagtaagactgaagatgtttaacttttttgacatcgattcgta |
8656449 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 111; E-Value: 3e-56
Query Start/End: Original strand, 16 - 158
Target Start/End: Original strand, 8679970 - 8680112
Alignment:
| Q |
16 |
atcgtccaccacaaggtcaaaggaccctaaaaacaagtaggttaatgctggaaaattcaaagaatttggaaataatgttcgttgaggcaaagcaacacaa |
115 |
Q |
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| T |
8679970 |
atcgtccacaccaaagtcaaaggaccctaaaaacaagtaggttaatcatggaaaattcaaagaatttggaaataatgttcgttgaggaaaagcaacagaa |
8680069 |
T |
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| Q |
116 |
atgtgaagagatgttaaagtgtcacatgaaaagaagtaagacc |
158 |
Q |
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| T |
8680070 |
atgtgaagtgatgttaaagtgtcacatgaaaagaagtaagacc |
8680112 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 31 - 137
Target Start/End: Original strand, 7115163 - 7115269
Alignment:
| Q |
31 |
gtcaaaggaccctaaaaacaagtaggttaatgctggaaaattcaaagaatttggaaataatgttcgttgaggcaaagcaacacaaatgtgaagagatgtt |
130 |
Q |
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| T |
7115163 |
gtcaaaggaccataaagacaaactagttaatgctggaaaattcaaagaatttggaaataaagttctttgaggagaagcaacagaaacgtgaagagatgtt |
7115262 |
T |
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| Q |
131 |
aaagtgt |
137 |
Q |
| |
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||||||| |
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| T |
7115263 |
aaagtgt |
7115269 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #5
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 31 - 137
Target Start/End: Original strand, 7120235 - 7120341
Alignment:
| Q |
31 |
gtcaaaggaccctaaaaacaagtaggttaatgctggaaaattcaaagaatttggaaataatgttcgttgaggcaaagcaacacaaatgtgaagagatgtt |
130 |
Q |
| |
|
||||||||||| |||| |||| ||||||||||||||||||||||||||||||||||| |||| |||||| |||||||| ||| ||||||||||||| |
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| T |
7120235 |
gtcaaaggaccataaagacaaactagttaatgctggaaaattcaaagaatttggaaataaagttctttgaggagaagcaacagaaacgtgaagagatgtt |
7120334 |
T |
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| Q |
131 |
aaagtgt |
137 |
Q |
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||||||| |
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| T |
7120335 |
aaagtgt |
7120341 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #6
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 31 - 137
Target Start/End: Original strand, 7123639 - 7123745
Alignment:
| Q |
31 |
gtcaaaggaccctaaaaacaagtaggttaatgctggaaaattcaaagaatttggaaataatgttcgttgaggcaaagcaacacaaatgtgaagagatgtt |
130 |
Q |
| |
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||||||||||| |||| |||| ||||||||||||||||||||||||||||||||||| |||| |||||| |||||||| ||| ||||||||||||| |
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| T |
7123639 |
gtcaaaggaccgtaaagacaaactagttaatgctggaaaattcaaagaatttggaaataaagttctttgaggagaagcaacagaaacgtgaagagatgtt |
7123738 |
T |
|
| Q |
131 |
aaagtgt |
137 |
Q |
| |
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||||||| |
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| T |
7123739 |
aaagtgt |
7123745 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #7
Raw Score: 45; E-Value: 8e-17
Query Start/End: Original strand, 43 - 151
Target Start/End: Original strand, 7175036 - 7175144
Alignment:
| Q |
43 |
taaaaacaagtaggttaatgctggaaaattcaaagaatttggaaataatgttcgttgaggcaaagcaacacaaatgtgaagagatgttaaagtgtcacat |
142 |
Q |
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|||| |||||| |||||| ||||||||||||| ||||||||||||||||||| ||||| || || | ||| || ||||||||||||||||| |||| |
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| T |
7175036 |
taaagacaagttggttaaagctggaaaattcagagaatttggaaataatgtttcttgagaatcagaaaaagaaaggttaagagatgttaaagtgtgacat |
7175135 |
T |
|
| Q |
143 |
gaaaagaag |
151 |
Q |
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||||||||| |
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| T |
7175136 |
gaaaagaag |
7175144 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 39; Significance: 0.0000000000003; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 56 - 94
Target Start/End: Complemental strand, 13492369 - 13492331
Alignment:
| Q |
56 |
gttaatgctggaaaattcaaagaatttggaaataatgtt |
94 |
Q |
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||||||||||||||||||||||||||||||||||||||| |
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| T |
13492369 |
gttaatgctggaaaattcaaagaatttggaaataatgtt |
13492331 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 56 - 96
Target Start/End: Original strand, 38862905 - 38862945
Alignment:
| Q |
56 |
gttaatgctggaaaattcaaagaatttggaaataatgttcg |
96 |
Q |
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|||||||| || ||||||||||| ||||||||||||||||| |
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| T |
38862905 |
gttaatgcgggcaaattcaaagattttggaaataatgttcg |
38862945 |
T |
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