View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10201A_low_337 (Length: 210)
Name: NF10201A_low_337
Description: NF10201A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10201A_low_337 |
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| [»] scaffold0035 (1 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 173; Significance: 3e-93; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 173; E-Value: 3e-93
Query Start/End: Original strand, 20 - 204
Target Start/End: Complemental strand, 5832045 - 5831861
Alignment:
| Q |
20 |
aaggaagagttgctgataattcaattgggcccttagagatttgtgtggggaaaaatggcacgtttgaggaactaatggattatgcaatatcgcgtggtgc |
119 |
Q |
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| T |
5832045 |
aaggaagagttgctgataattcaattgggccattagagattcgtgtggtgaaaaatggcacgtttgaggaactaatggattatgcaatatcgcgtggtgc |
5831946 |
T |
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| Q |
120 |
aagtatcaatcagtataaagttcctaggtgcgtgagtttcactcctataatggaacttcttgactctagggtggtatcagttcat |
204 |
Q |
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| T |
5831945 |
aagtatcaatcagtataaagttcctaggtgcgtgagtttcactcctataatggaacttcttgactctagggtggtatcagttcat |
5831861 |
T |
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Target: chr5; HSP #2
Raw Score: 84; E-Value: 4e-40
Query Start/End: Original strand, 20 - 187
Target Start/End: Original strand, 5823994 - 5824161
Alignment:
| Q |
20 |
aaggaagagttgctgataattcaattgggcccttagagatttgtgtggggaaaaatggcacgtttgaggaactaatggattatgcaatatcgcgtggtgc |
119 |
Q |
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| T |
5823994 |
aaggaagagttgctgataattcaattgggccattagagattcgtgtggtgaaaaatggcacattcgaggatttgatggattattatatatcgtgtggtgc |
5824093 |
T |
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| Q |
120 |
aagtatcaatcagtataaagttcctaggtgcgtgagtttcactcctataatggaacttcttgactcta |
187 |
Q |
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| T |
5824094 |
atcgattaatcaatataaagttcctaggtgcgtgagtctcacacctgtagtggaacttcttgactcta |
5824161 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0035 (Bit Score: 36; Significance: 0.00000000002; HSPs: 1)
Name: scaffold0035
Description:
Target: scaffold0035; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 28 - 203
Target Start/End: Original strand, 78763 - 78938
Alignment:
| Q |
28 |
gttgctgataattcaattgggcccttagagatttgtgtggggaaaaatggcacgtttgaggaactaatggattatgcaatatcgcgtggtgcaagtatca |
127 |
Q |
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| T |
78763 |
gttgctgatcattcaattggaccattggagataagggttgtgaagagtggaacttttgaggagcttatggattatgcaatctcaagaggtgcttcaataa |
78862 |
T |
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| Q |
128 |
atcagtataaagttcctaggtgcgtgagtttcactcctataatggaacttcttgactctagggtggtatcagttca |
203 |
Q |
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| T |
78863 |
atcaatataaagttccaaggtgtgttaattttactcctataatggagcttttggactctagggtggtctctgttca |
78938 |
T |
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