View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF10201A_low_338 (Length: 209)

Name: NF10201A_low_338
Description: NF10201A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF10201A_low_338
NF10201A_low_338
[»] chr2 (6 HSPs)
chr2 (19-200)||(37307445-37307626)
chr2 (19-196)||(13186680-13186858)
chr2 (19-184)||(7305311-7305477)
chr2 (26-121)||(40190655-40190750)
chr2 (130-199)||(40196727-40196797)
chr2 (36-116)||(26381517-26381597)
[»] chr5 (6 HSPs)
chr5 (30-196)||(34080978-34081145)
chr5 (19-196)||(18259368-18259545)
chr5 (30-97)||(4560554-4560621)
chr5 (26-116)||(32216661-32216751)
chr5 (19-97)||(18883272-18883350)
chr5 (19-68)||(18933974-18934023)
[»] chr3 (7 HSPs)
chr3 (19-196)||(54346527-54346705)
chr3 (19-196)||(27156396-27156573)
chr3 (19-181)||(46428363-46428526)
chr3 (19-181)||(42794293-42794456)
chr3 (19-181)||(54812477-54812640)
chr3 (19-99)||(34265159-34265239)
chr3 (19-107)||(43912481-43912569)
[»] chr1 (5 HSPs)
chr1 (19-196)||(23949490-23949668)
chr1 (19-196)||(23085139-23085318)
chr1 (19-196)||(5308434-5308612)
chr1 (19-196)||(50952796-50952975)
chr1 (19-181)||(22065430-22065593)
[»] chr8 (5 HSPs)
chr8 (19-196)||(1635790-1635968)
chr8 (19-196)||(26616953-26617131)
chr8 (19-196)||(456584-456762)
chr8 (19-181)||(44145512-44145675)
chr8 (19-74)||(38560847-38560902)
[»] chr7 (6 HSPs)
chr7 (19-196)||(8019973-8020151)
chr7 (19-196)||(48618726-48618904)
chr7 (31-190)||(29213969-29214129)
chr7 (95-196)||(25713258-25713360)
chr7 (19-97)||(24473340-24473418)
chr7 (17-98)||(29760071-29760152)
[»] chr4 (5 HSPs)
chr4 (19-190)||(34390034-34390206)
chr4 (19-190)||(36894645-36894818)
chr4 (19-181)||(47597819-47597982)
chr4 (19-99)||(43271019-43271099)
chr4 (50-82)||(28561506-28561538)
[»] chr6 (1 HSPs)
chr6 (19-181)||(1223191-1223354)


Alignment Details
Target: chr2 (Bit Score: 174; Significance: 8e-94; HSPs: 6)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 174; E-Value: 8e-94
Query Start/End: Original strand, 19 - 200
Target Start/End: Original strand, 37307445 - 37307626
Alignment:
Q  19 atctcaacatataaggcatcacaagctccaatcttcttagtgtagcctttgatccatctaccgtctgaatcacgaaaaagatcgccacatccagcaataa 118  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  37307445 atctcaacatataaggcatcacaagctccaatcttcttagtgtagcctttgatccatctaccgtctgaatcacgaaaaagatcgccacatccagcaataa 37307544  T
Q  119 ccctcatatctttgcaagcaccatcatgttgagcttggtccaaccttcttgaggccgcttccaacttatatatatgatgtcc 200  Q
    ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||    
T  37307545 ccctcgtatctttgcaagcaccatcatgttgagcttggtccaaccttcttgaggccgcttccaacttatatagatgatgtcc 37307626  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 115; E-Value: 1e-58
Query Start/End: Original strand, 19 - 196
Target Start/End: Complemental strand, 13186858 - 13186680
Alignment:
Q  19 atctcaacatataaggcatcacaagctccaatcttcttagtgtagcctttgatccatctaccgtctgaatcacgaaaaagatcgccacatccagcaataa 118  Q
    |||||| ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||  ||||||||||||||||||    
T  13186858 atctcagcatgtaaggcatcacaagctccaatcttcttagtgtagcctttgatccatctaccgtctaaatcacgaaaaaggccgccacatccagcaataa 13186759  T
Q  119 ccctcatatctttgcaagcaccatca-tgttgagcttggtccaaccttcttgaggccgcttccaacttatatatatgat 196  Q
    ||| |||||| ||||||||||||||| | || |||||| || |||||||| ||||||||||||||| |||||| |||||    
T  13186758 cccccatatccttgcaagcaccatcactattaagcttgatcaaaccttctcgaggccgcttccaacctatatagatgat 13186680  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 99; E-Value: 5e-49
Query Start/End: Original strand, 19 - 184
Target Start/End: Original strand, 7305311 - 7305477
Alignment:
Q  19 atctcaacatataaggcatcacaagctccaatcttcttagtgtagcctttgatccatctaccgtctgaatcacgaaaaagatcgccacatccagcaataa 118  Q
    |||||| ||| |||||||||||||||||||||||| ||||||||| |||||||||||||||||||||||||| |||||||  | ||||||||||||||||    
T  7305311 atctcagcatgtaaggcatcacaagctccaatctttttagtgtagtctttgatccatctaccgtctgaatcatgaaaaaggccaccacatccagcaataa 7305410  T
Q  119 ccctcatatctttgcaagcaccatca-tgttgagcttggtccaaccttcttgaggccgcttccaact 184  Q
    | | |||||| ||||||||||||||| | || |||||| ||||||||||||||||||||| ||||||    
T  7305411 ctcccatatccttgcaagcaccatcactattaagcttgatccaaccttcttgaggccgctaccaact 7305477  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 80; E-Value: 1e-37
Query Start/End: Original strand, 26 - 121
Target Start/End: Original strand, 40190655 - 40190750
Alignment:
Q  26 catataaggcatcacaagctccaatcttcttagtgtagcctttgatccatctaccgtctgaatcacgaaaaagatcgccacatccagcaataaccc 121  Q
    |||||||||||||||||||||||||||||||| |||||||||||||||||||| |||||||||||||||||||| |||||||||||| ||||||||    
T  40190655 catataaggcatcacaagctccaatcttcttaatgtagcctttgatccatctaacgtctgaatcacgaaaaagaacgccacatccagaaataaccc 40190750  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 130 - 199
Target Start/End: Original strand, 40196727 - 40196797
Alignment:
Q  130 ttgcaagcaccatcat-gttgagcttggtccaaccttcttgaggccgcttccaacttatatatatgatgtc 199  Q
    |||||||||||| ||| |||||||||| ||||||||||| ||||||||||||||| |||||| ||||||||    
T  40196727 ttgcaagcaccaccattgttgagcttgatccaaccttctcgaggccgcttccaacctatatagatgatgtc 40196797  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 36 - 116
Target Start/End: Original strand, 26381517 - 26381597
Alignment:
Q  36 atcacaagctccaatcttcttagtgtagcctttgatccatctaccgtctgaatcacgaaaaagatcgccacatccagcaat 116  Q
    |||||| || |||||||||||||||||| |||| ||||||||||| ||||| |||||||| ||||   |||||||||||||    
T  26381517 atcacacgcaccaatcttcttagtgtagtctttaatccatctaccttctgagtcacgaaagagattcgcacatccagcaat 26381597  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 124; Significance: 6e-64; HSPs: 6)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 124; E-Value: 6e-64
Query Start/End: Original strand, 30 - 196
Target Start/End: Original strand, 34080978 - 34081145
Alignment:
Q  30 taaggcatcacaagctccaatcttcttagtgtagcctttgatccatctaccgtctgaatcacgaaaaagatcgccacatccagcaataaccctcatatct 129  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| ||||||     
T  34080978 taaggcatcacaagctccaatcttcttagtgtagcctttgatccatctaccgtctgaatcacgaaaaagaccgccacatccagcaataacccccatatcc 34081077  T
Q  130 ttgcaagcaccatca-tgttgagcttggtccaaccttcttgaggccgcttccaacttatatatatgat 196  Q
    ||||||||||||||| | || |||||| ||||||||||| ||||||||||||||| |||||| |||||    
T  34081078 ttgcaagcaccatcactattaagcttgatccaaccttctcgaggccgcttccaacctatatagatgat 34081145  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 103; E-Value: 2e-51
Query Start/End: Original strand, 19 - 196
Target Start/End: Original strand, 18259368 - 18259545
Alignment:
Q  19 atctcaacatataaggcatcacaagctccaatcttcttagtgtagcctttgatccatctaccgtctgaatcacgaaaaagatcgccacatccagcaataa 118  Q
    |||||| ||| |||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||  |||||||| || ||||||    
T  18259368 atctcagcatgtaaggcatcacaagctccaatcttcttagtgtagtctttgatccatctaccgtctgaatcacgaaaaaggccgccacat-caacaataa 18259466  T
Q  119 ccctcatatctttgcaagcaccatca-tgttgagcttggtccaaccttcttgaggccgcttccaacttatatatatgat 196  Q
    ||| |||||| |||||||||| |||| | || |||||| ||||||||||| ||||||||||||||| |||||| |||||    
T  18259467 cccccatatccttgcaagcactatcactattaagcttgatccaaccttctcgaggccgcttccaacctatatagatgat 18259545  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 52; E-Value: 5e-21
Query Start/End: Original strand, 30 - 97
Target Start/End: Original strand, 4560554 - 4560621
Alignment:
Q  30 taaggcatcacaagctccaatcttcttagtgtagcctttgatccatctaccgtctgaatcacgaaaaa 97  Q
    ||||||||||||||||||||||||||||||||||||||| |||||| |||| |||| |||||||||||    
T  4560554 taaggcatcacaagctccaatcttcttagtgtagcctttaatccatttaccatctgcatcacgaaaaa 4560621  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 26 - 116
Target Start/End: Complemental strand, 32216751 - 32216661
Alignment:
Q  26 catataaggcatcacaagctccaatcttcttagtgtagcctttgatccatctaccgtctgaatcacgaaaaagatcgccacatccagcaat 116  Q
    |||||||||||| |||  | |||||||||||| |||||||||| ||||||||||||||  | |||||||||||| | ||||||||| ||||    
T  32216751 catataaggcatgacacacaccaatcttcttattgtagcctttaatccatctaccgtccaagtcacgaaaaagacccccacatccaacaat 32216661  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 19 - 97
Target Start/End: Complemental strand, 18883350 - 18883272
Alignment:
Q  19 atctcaacatataaggcatcacaagctccaatcttcttagtgtagcctttgatccatctaccgtctgaatcacgaaaaa 97  Q
    |||||||||  |||||||||||||| ||||||||| |||||| ||||||| |||||| |||| |||| |||| ||||||    
T  18883350 atctcaacaagtaaggcatcacaagttccaatcttattagtgcagcctttaatccatttaccatctgcatcatgaaaaa 18883272  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 19 - 68
Target Start/End: Complemental strand, 18934023 - 18933974
Alignment:
Q  19 atctcaacatataaggcatcacaagctccaatcttcttagtgtagccttt 68  Q
    |||||| ||| |||||||||||||||||||||||| ||||||||||||||    
T  18934023 atctcagcatgtaaggcatcacaagctccaatctttttagtgtagccttt 18933974  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 123; Significance: 2e-63; HSPs: 7)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 123; E-Value: 2e-63
Query Start/End: Original strand, 19 - 196
Target Start/End: Complemental strand, 54346705 - 54346527
Alignment:
Q  19 atctcaacatataaggcatcacaagctccaatcttcttagtgtagcctttgatccatctaccgtctgaatcacgaaaaagatcgccacatccagcaataa 118  Q
    |||||| ||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||  ||||||||||||||||||    
T  54346705 atctcagcatgtaaggcatcacaagctccaatcttcttagtgtagcctttgatccatctaccgtctgaatcacgaaaaaggccgccacatccagcaataa 54346606  T
Q  119 ccctcatatctttgcaagcaccatca-tgttgagcttggtccaaccttcttgaggccgcttccaacttatatatatgat 196  Q
    ||| |||||| ||||||||||||||| | || |||||| ||||||||||| ||||||||||||||| |||||| |||||    
T  54346605 cccccatatccttgcaagcaccatcactattaagcttgatccaaccttctcgaggccgcttccaacctatatagatgat 54346527  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 103; E-Value: 2e-51
Query Start/End: Original strand, 19 - 196
Target Start/End: Original strand, 27156396 - 27156573
Alignment:
Q  19 atctcaacatataaggcatcacaagctccaatcttcttagtgtagcctttgatccatctaccgtctgaatcacgaaaaagatcgccacatccagcaataa 118  Q
    |||||| ||| ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |||||||  |||||||||||| |||||    
T  27156396 atctcagcatgtaaggcatcacaagctctaatcttcttagtgtagcctttgatccatctaccgtctgaatcatgaaaaaggccgccacatccag-aataa 27156494  T
Q  119 ccctcatatctttgcaagcaccatca-tgttgagcttggtccaaccttcttgaggccgcttccaacttatatatatgat 196  Q
    ||| |||||| ||||||||||||||| | || |||||| ||||||||| | ||||||||||||||| |||||| |||||    
T  27156495 cccccatatccttgcaagcaccatcactattaagcttgatccaaccttttcgaggccgcttccaacctatatagatgat 27156573  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 60; E-Value: 9e-26
Query Start/End: Original strand, 19 - 181
Target Start/End: Complemental strand, 46428526 - 46428363
Alignment:
Q  19 atctcaacatataaggcatcacaagctccaatcttcttagtgtagcctttgatccatctaccgtctgaatcacgaaaaagatcgccacatccagcaataa 118  Q
    |||||||||| ||||||||||||||||||||||||||||||||||||||| |||||| |||| |||| ||||||||||| | | ||||| || | ||||     
T  46428526 atctcaacatgtaaggcatcacaagctccaatcttcttagtgtagcctttaatccatttaccatctgcatcacgaaaaataccaccacaaccggaaatat 46428427  T
Q  119 ccctcatatctttgcaagcaccatc-atgttgagcttggtccaaccttcttgaggccgcttcca 181  Q
      | |||||| ||||| ||||| ||  ||||||||||| | |||||||| ||||| || |||||    
T  46428426 gacccatatccttgcaggcaccgtcgctgttgagcttgattcaaccttcctgaggtcgtttcca 46428363  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 52; E-Value: 5e-21
Query Start/End: Original strand, 19 - 181
Target Start/End: Complemental strand, 42794456 - 42794293
Alignment:
Q  19 atctcaacatataaggcatcacaagctccaatcttcttagtgtagcctttgatccatctaccgtctgaatcacgaaaaagatcgccacatccagcaataa 118  Q
    |||||| ||| |||| |||||||||||||||||||||||||||||||||| |||||| |||| |||| ||| ||||||| | | ||||| || | ||||     
T  42794456 atctcagcatgtaagacatcacaagctccaatcttcttagtgtagcctttaatccatttaccatctgcatcgcgaaaaataccaccacaaccggaaatat 42794357  T
Q  119 ccctcatatctttgcaagcaccatc-atgttgagcttggtccaaccttcttgaggccgcttcca 181  Q
      | |||||| ||||| ||||| ||  ||||||||||| |||||||||| ||||| || |||||    
T  42794356 gacccatatccttgcaggcaccgtcgctgttgagcttgatccaaccttcctgaggtcgtttcca 42794293  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 52; E-Value: 5e-21
Query Start/End: Original strand, 19 - 181
Target Start/End: Original strand, 54812477 - 54812640
Alignment:
Q  19 atctcaacatataaggcatcacaagctccaatcttcttagtgtagcctttgatccatctaccgtctgaatcacgaaaaagatcgccacatccagcaataa 118  Q
    |||||| ||| |||||||||||||||| |||||||||||||||||||||| |||||| |||| |||| ||||||||||| | | ||||| || | ||||     
T  54812477 atctcagcatgtaaggcatcacaagcttcaatcttcttagtgtagcctttaatccatttaccatctgcatcacgaaaaataccaccacaaccggaaatat 54812576  T
Q  119 ccctcatatctttgcaagcaccatc-atgttgagcttggtccaaccttcttgaggccgcttcca 181  Q
      | |||||| ||||| ||||| ||   |||||||||| |||||||||| ||||| || |||||    
T  54812577 gacccatatccttgcaggcaccgtcgccgttgagcttgatccaaccttcctgaggtcgtttcca 54812640  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 19 - 99
Target Start/End: Complemental strand, 34265239 - 34265159
Alignment:
Q  19 atctcaacatataaggcatcacaagctccaatcttcttagtgtagcctttgatccatctaccgtctgaatcacgaaaaaga 99  Q
    |||||| ||| |||| ||||||||||| ||||||| |||||||| | ||| |||||| |||| ||||||||||||| ||||    
T  34265239 atctcagcatgtaagacatcacaagcttcaatctttttagtgtaacatttaatccatttaccatctgaatcacgaataaga 34265159  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 19 - 107
Target Start/End: Original strand, 43912481 - 43912569
Alignment:
Q  19 atctcaacatataaggcatcacaagctccaatcttcttagtgtagcctttgatccatctaccgtctgaatcacgaaaaagatcgccaca 107  Q
    |||||| ||| ||||| ||||||||||| ||||||||||  ||||||||| |||||| || | |||  ||||||||||| ||| |||||    
T  43912481 atctcatcatgtaaggtatcacaagctcaaatcttcttaacgtagcctttaatccatttatcatctacatcacgaaaaatatcaccaca 43912569  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 123; Significance: 2e-63; HSPs: 5)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 123; E-Value: 2e-63
Query Start/End: Original strand, 19 - 196
Target Start/End: Complemental strand, 23949668 - 23949490
Alignment:
Q  19 atctcaacatataaggcatcacaagctccaatcttcttagtgtagcctttgatccatctaccgtctgaatcacgaaaaagatcgccacatccagcaataa 118  Q
    |||||| ||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||  ||||||||||||||||||    
T  23949668 atctcagcatgtaaggcatcacaagctccaatcttcttagtgtagcctttgatccatctaccgtctgaatcacgaaaaaggccgccacatccagcaataa 23949569  T
Q  119 ccctcatatctttgcaagcaccatca-tgttgagcttggtccaaccttcttgaggccgcttccaacttatatatatgat 196  Q
    ||| |||||| ||||||||||||||| | || |||||| ||||||||||| ||||||||||||||| |||||| |||||    
T  23949568 cccccatatccttgcaagcaccatcactattaagcttgatccaaccttctcgaggccgcttccaacctatatagatgat 23949490  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 116; E-Value: 3e-59
Query Start/End: Original strand, 19 - 196
Target Start/End: Original strand, 23085139 - 23085318
Alignment:
Q  19 atctcaacatataaggcatcacaagctccaatcttcttagtgtagcctttgatccatctaccgtctgaatcacgaaaaagatcgccacatccagcaataa 118  Q
    |||||| ||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||  |||| |||||||||||||    
T  23085139 atctcagcatgtaaggcatcacaagctccaatcttcttagtgtagcctttgatccatctaccgtctgaatcacgaaaaaggccgcctcatccagcaataa 23085238  T
Q  119 -ccctcatatctttgcaagcaccatca-tgttgagcttggtccaaccttcttgaggccgcttccaacttatatatatgat 196  Q
     ||| |||||| ||||||||||||||| | || |||||| ||||||||||||||||||||||||||| |||||| |||||    
T  23085239 ccccccatatccttgcaagcaccatcactattaagcttgatccaaccttcttgaggccgcttccaacctatatagatgat 23085318  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 115; E-Value: 1e-58
Query Start/End: Original strand, 19 - 196
Target Start/End: Complemental strand, 5308612 - 5308434
Alignment:
Q  19 atctcaacatataaggcatcacaagctccaatcttcttagtgtagcctttgatccatctaccgtctgaatcacgaaaaagatcgccacatccagcaataa 118  Q
    |||||| ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||   |||||||||||||||||    
T  5308612 atctcagcatgtaaggcatcacaagctccaatcttcttagtgtagcctttgatccatctaccgtttgaatcacgaaaaaggcagccacatccagcaataa 5308513  T
Q  119 ccctcatatctttgcaagcaccatca-tgttgagcttggtccaaccttcttgaggccgcttccaacttatatatatgat 196  Q
    ||| |||||| ||||||||||||||| | || |||||| ||||||||||| ||||||||||||||| |||||| |||||    
T  5308512 cccccatatccttgcaagcaccatcactattaagcttgatccaaccttctcgaggccgcttccaacctatatagatgat 5308434  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 112; E-Value: 8e-57
Query Start/End: Original strand, 19 - 196
Target Start/End: Original strand, 50952796 - 50952975
Alignment:
Q  19 atctcaacatataaggcatcacaagctccaatcttcttagtgta-gcctttgatccatctaccgtctgaatcacgaaaaagatcgccacatccagcaata 117  Q
    |||||| ||| ||||||||||||||||||||||||||||||||| |||||||||| |||||||||||||||||||||||||  |||||||||||||||||    
T  50952796 atctcagcatgtaaggcatcacaagctccaatcttcttagtgtaagcctttgatctatctaccgtctgaatcacgaaaaaggccgccacatccagcaata 50952895  T
Q  118 accctcatatctttgcaagcaccatca-tgttgagcttggtccaaccttcttgaggccgcttccaacttatatatatgat 196  Q
    |||| |||||| ||||||||||||||| | || |||||| ||||||||||| ||||||||||||||| |||||| |||||    
T  50952896 acccccatatccttgcaagcaccatcactattaagcttgatccaaccttctcgaggccgcttccaacctatatagatgat 50952975  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 60; E-Value: 9e-26
Query Start/End: Original strand, 19 - 181
Target Start/End: Original strand, 22065430 - 22065593
Alignment:
Q  19 atctcaacatataaggcatcacaagctccaatcttcttagtgtagcctttgatccatctaccgtctgaatcacgaaaaagatcgccacatccagcaataa 118  Q
    |||||| ||| ||||||||||||||||||||||||||||||||||||||| |||||| |||| |||| ||||||||||| | | ||||| ||   ||||     
T  22065430 atctcagcatgtaaggcatcacaagctccaatcttcttagtgtagcctttaatccatttaccatctgcatcacgaaaaataccaccacaaccgaaaatat 22065529  T
Q  119 ccctcatatctttgcaagcaccatca-tgttgagcttggtccaaccttcttgaggccgcttcca 181  Q
      | |||||| ||||| ||||| ||| ||||||||||| |||||||||| ||||| || |||||    
T  22065530 gacccatatccttgcaggcaccgtcactgttgagcttgatccaaccttcctgaggtcgtttcca 22065593  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 119; Significance: 5e-61; HSPs: 5)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 119; E-Value: 5e-61
Query Start/End: Original strand, 19 - 196
Target Start/End: Complemental strand, 1635968 - 1635790
Alignment:
Q  19 atctcaacatataaggcatcacaagctccaatcttcttagtgtagcctttgatccatctaccgtctgaatcacgaaaaagatcgccacatccagcaataa 118  Q
    |||||| ||| |||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||  ||||||||||||||||||    
T  1635968 atctcagcatgtaaggcatcacaagctccaatcttcttagtgtagcctttgatccatttaccgtctgaatcacgaaaaaggccgccacatccagcaataa 1635869  T
Q  119 ccctcatatctttgcaagcaccatca-tgttgagcttggtccaaccttcttgaggccgcttccaacttatatatatgat 196  Q
    |||  ||||| ||||||||||||||| | || |||||| ||||||||||||||||||||||||||| |||||| |||||    
T  1635868 cccctatatccttgcaagcaccatcactattaagcttgatccaaccttcttgaggccgcttccaacctatatagatgat 1635790  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 119; E-Value: 5e-61
Query Start/End: Original strand, 19 - 196
Target Start/End: Original strand, 26616953 - 26617131
Alignment:
Q  19 atctcaacatataaggcatcacaagctccaatcttcttagtgtagcctttgatccatctaccgtctgaatcacgaaaaagatcgccacatccagcaataa 118  Q
    |||||| ||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||  ||||||||  ||||||||    
T  26616953 atctcagcatgtaaggcatcacaagctccaatcttcttagtgtagcctttgatccatctaccgtctgaatcacgaaaaaggccgccacatgaagcaataa 26617052  T
Q  119 ccctcatatctttgcaagcaccatca-tgttgagcttggtccaaccttcttgaggccgcttccaacttatatatatgat 196  Q
    |||||||||| ||||||||||||||| | || |||||| ||||||||||| ||||||||||||||| |||||| |||||    
T  26617053 ccctcatatccttgcaagcaccatcactattaagcttgatccaaccttctcgaggccgcttccaacctatatagatgat 26617131  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 111; E-Value: 3e-56
Query Start/End: Original strand, 19 - 196
Target Start/End: Original strand, 456584 - 456762
Alignment:
Q  19 atctcaacatataaggcatcacaagctccaatcttcttagtgtagcctttgatccatctaccgtctgaatcacgaaaaagatcgccacatccagcaataa 118  Q
    |||||| |||||||| |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||  ||||||||||||||||||    
T  456584 atctcagcatataagacatcacaaactccaatcttcttagtgtagcctttgatccatctaccgtctgaatcacgaaaaaggccgccacatccagcaataa 456683  T
Q  119 ccctcatatctttgcaagcaccatca-tgttgagcttggtccaaccttcttgaggccgcttccaacttatatatatgat 196  Q
    ||| |||||| ||||||||||||||| | || ||| || ||||||| ||| ||||||||||||||| |||||| |||||    
T  456684 cccccatatccttgcaagcaccatcactattaagcctgatccaaccctctcgaggccgcttccaacctatatagatgat 456762  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 60; E-Value: 9e-26
Query Start/End: Original strand, 19 - 181
Target Start/End: Complemental strand, 44145675 - 44145512
Alignment:
Q  19 atctcaacatataaggcatcacaagctccaatcttcttagtgtagcctttgatccatctaccgtctgaatcacgaaaaagatcgccacatccagcaataa 118  Q
    |||||| ||| ||||||||||||||||||||||||||||||||||||||| |||||| |||| |||| ||||||||||| | | ||||| || | ||||     
T  44145675 atctcagcatgtaaggcatcacaagctccaatcttcttagtgtagcctttaatccatttaccatctgcatcacgaaaaataccaccacaaccggaaatat 44145576  T
Q  119 ccctcatatctttgcaagcaccatc-atgttgagcttggtccaaccttcttgaggccgcttcca 181  Q
      | |||||| ||||| ||||| ||  ||||||||||| |||||||||| ||||| || |||||    
T  44145575 gacccatatccttgcaggcaccgtcgctgttgagcttgatccaaccttcctgaggtcgtttcca 44145512  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 32; E-Value: 0.000000004
Query Start/End: Original strand, 19 - 74
Target Start/End: Original strand, 38560847 - 38560902
Alignment:
Q  19 atctcaacatataaggcatcacaagctccaatcttcttagtgtagcctttgatcca 74  Q
    |||||||||| ||||||||||||| |||| || |||| |||||||||||| |||||    
T  38560847 atctcaacatgtaaggcatcacaaactccgatattctcagtgtagcctttaatcca 38560902  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 119; Significance: 5e-61; HSPs: 6)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 119; E-Value: 5e-61
Query Start/End: Original strand, 19 - 196
Target Start/End: Original strand, 8019973 - 8020151
Alignment:
Q  19 atctcaacatataaggcatcacaagctccaatcttcttagtgtagcctttgatccatctaccgtctgaatcacgaaaaagatcgccacatccagcaataa 118  Q
    |||||| ||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||  ||||||||||| ||||||    
T  8019973 atctcagcatgtaaggcatcacaagctccaatcttcttagtgtagcctttgatccatctaccgtctgaatcacgaaaaaggccgccacatccaacaataa 8020072  T
Q  119 ccctcatatctttgcaagcaccatca-tgttgagcttggtccaaccttcttgaggccgcttccaacttatatatatgat 196  Q
    ||| |||||| ||||||||||||||| | || |||||| ||||||||||| ||||||||||||||| |||||| |||||    
T  8020073 cccccatatccttgcaagcaccatcactattaagcttgatccaaccttctcgaggccgcttccaacctatatagatgat 8020151  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 111; E-Value: 3e-56
Query Start/End: Original strand, 19 - 196
Target Start/End: Complemental strand, 48618904 - 48618726
Alignment:
Q  19 atctcaacatataaggcatcacaagctccaatcttcttagtgtagcctttgatccatctaccgtctgaatcacgaaaaagatcgccacatccagcaataa 118  Q
    |||||| ||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| ||||||  |||||||||| |||||||    
T  48618904 atctcagcatgtaaggcatcacaagctccaatcttcttagtgtagcctttgatccatctaccatctgaatcacaaaaaaggccgccacatccggcaataa 48618805  T
Q  119 ccctcatatctttgcaagcaccatca-tgttgagcttggtccaaccttcttgaggccgcttccaacttatatatatgat 196  Q
    ||| |||| | ||||||||||||||| | || |||||| ||||||||||||||||||||||||||| |||||| |||||    
T  48618804 cccccataaccttgcaagcaccatcactattaagcttgatccaaccttcttgaggccgcttccaacctatatagatgat 48618726  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 85; E-Value: 1e-40
Query Start/End: Original strand, 31 - 190
Target Start/End: Original strand, 29213969 - 29214129
Alignment:
Q  31 aaggcatcacaagctccaatcttcttagtgtagcctttgatccatctaccgtctgaatcacgaaaaagatcgccacatccagcaataaccctcatatctt 130  Q
    |||||||||||||||| ||||||||||||||||| ||||| ||||||||||||| |||||||||||||  |||||||||||  ||||| || |||||  |    
T  29213969 aaggcatcacaagctctaatcttcttagtgtagcatttgacccatctaccgtctaaatcacgaaaaaggccgccacatccaaaaataatccccatattct 29214068  T
Q  131 tgcaagcaccatca-tgttgagcttggtccaaccttcttgaggccgcttccaacttatata 190  Q
    |||||||||||||| | ||||||||| |||||||||| |||| ||||||||||| ||||||    
T  29214069 tgcaagcaccatcactattgagcttgatccaaccttcatgagaccgcttccaacctatata 29214129  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 59; E-Value: 3e-25
Query Start/End: Original strand, 95 - 196
Target Start/End: Complemental strand, 25713360 - 25713258
Alignment:
Q  95 aaagatcgccacatccagcaataaccctcatatctttgcaagcaccatca-tgttgagcttggtccaaccttcttgaggccgcttccaacttatatatat 193  Q
    ||||| ||||||||||| ||||||||| ||| || ||||||||| ||||| ||||||||||| ||||||||||||||||||||||||||| |||||| ||    
T  25713360 aaagaccgccacatccaacaataacccccatgtccttgcaagcatcatcactgttgagcttgatccaaccttcttgaggccgcttccaacctatatagat 25713261  T
Q  194 gat 196  Q
    |||    
T  25713260 gat 25713258  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 19 - 97
Target Start/End: Complemental strand, 24473418 - 24473340
Alignment:
Q  19 atctcaacatataaggcatcacaagctccaatcttcttagtgtagcctttgatccatctaccgtctgaatcacgaaaaa 97  Q
    |||||| ||| ||||||||||||||||||||||||||||||||| ||||| |||||| |||| |||| |||||||||||    
T  24473418 atctcagcatgtaaggcatcacaagctccaatcttcttagtgtaacctttaatccatttaccatctgcatcacgaaaaa 24473340  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 17 - 98
Target Start/End: Original strand, 29760071 - 29760152
Alignment:
Q  17 atatctcaacatataaggcatcacaagctccaatcttcttagtgtagcctttgatccatctaccgtctgaatcacgaaaaag 98  Q
    |||||||||||| ||| ||||||||| |||||||||||||||  || || ||||||||| | |||| || ||||| ||||||    
T  29760071 atatctcaacatgtaaagcatcacaaactccaatcttcttagcataaccattgatccattttccgtttgtatcacaaaaaag 29760152  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 113; Significance: 2e-57; HSPs: 5)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 113; E-Value: 2e-57
Query Start/End: Original strand, 19 - 190
Target Start/End: Original strand, 34390034 - 34390206
Alignment:
Q  19 atctcaacatataaggcatcacaagctccaatcttcttagtgtagcctttgatccatctaccgtctgaatcacgaaaaagatcgccacatccagcaataa 118  Q
    |||||| ||| |||||||||||||||||||||||||||||| |||||||||||||||||||||| |||||||||||||||  ||||||||||||||||||    
T  34390034 atctcagcatgtaaggcatcacaagctccaatcttcttagtatagcctttgatccatctaccgtttgaatcacgaaaaaggccgccacatccagcaataa 34390133  T
Q  119 ccctcatatctttgcaagcaccatca-tgttgagcttggtccaaccttcttgaggccgcttccaacttatata 190  Q
    ||| |||||| ||||||||||||||| | || |||||| ||||||||||| ||||||||||||||| ||||||    
T  34390134 cccccatatccttgcaagcaccatcactattaagcttgatccaaccttctcgaggccgcttccaacctatata 34390206  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 107; E-Value: 8e-54
Query Start/End: Original strand, 19 - 190
Target Start/End: Original strand, 36894645 - 36894818
Alignment:
Q  19 atctcaacatataaggcatcacaagctccaatcttcttagtgtagcctttgatccatctaccgtctgaatcacgaaaaagatcgccacatccagcaataa 118  Q
    |||||| ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||   ||||||||||||||||||    
T  36894645 atctcagcatgtaaggcatcacaagctccaatcttcttagtgtagcctttgatccatctaccgtctgaatcatgaaaaaagccgccacatccagcaataa 36894744  T
Q  119 ccctcatatctttgcaagcaccatcat--gttgagcttggtccaaccttcttgaggccgcttccaacttatata 190  Q
    ||| |||||| ||||||||||||||||   |  |||||| ||||||||||| ||||||||||||||| ||||||    
T  36894745 cccccatatccttgcaagcaccatcattattaaagcttgatccaaccttctcgaggccgcttccaacctatata 36894818  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 60; E-Value: 9e-26
Query Start/End: Original strand, 19 - 181
Target Start/End: Original strand, 47597819 - 47597982
Alignment:
Q  19 atctcaacatataaggcatcacaagctccaatcttcttagtgtagcctttgatccatctaccgtctgaatcacgaaaaagatcgccacatccagcaataa 118  Q
    |||||| ||| ||||||||||||||||||||||||||||||||||||||| |||||| |||| |||| ||||||||||| | | ||||| || | ||||     
T  47597819 atctcagcatgtaaggcatcacaagctccaatcttcttagtgtagcctttaatccatttaccatctgcatcacgaaaaataccaccacaaccggaaatat 47597918  T
Q  119 ccctcatatctttgcaagcaccatc-atgttgagcttggtccaaccttcttgaggccgcttcca 181  Q
      | |||||| ||||| ||||| ||  ||||||| ||| |||||||||||||||| || |||||    
T  47597919 gacccatatccttgcaggcaccgtcgctgttgagtttgatccaaccttcttgaggtcgtttcca 47597982  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 45; E-Value: 8e-17
Query Start/End: Original strand, 19 - 99
Target Start/End: Original strand, 43271019 - 43271099
Alignment:
Q  19 atctcaacatataaggcatcacaagctccaatcttcttagtgtagcctttgatccatctaccgtctgaatcacgaaaaaga 99  Q
    |||||| ||| |||||||||||||||||  |||||||||||||||||||| ||| || |||| ||||||| ||||||||||    
T  43271019 atctcagcatgtaaggcatcacaagctcacatcttcttagtgtagcctttaatcaatttaccatctgaattacgaaaaaga 43271099  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 50 - 82
Target Start/End: Original strand, 28561506 - 28561538
Alignment:
Q  50 tcttcttagtgtagcctttgatccatctaccgt 82  Q
    ||||||||||||||||||| |||||||||||||    
T  28561506 tcttcttagtgtagcctttaatccatctaccgt 28561538  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 48; Significance: 1e-18; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 19 - 181
Target Start/End: Original strand, 1223191 - 1223354
Alignment:
Q  19 atctcaacatataaggcatcacaagctccaatcttcttagtgtagcctttgatccatctaccgtctgaatcacgaaaaagatcgccacatccagcaataa 118  Q
    |||||| ||| ||||||||||||||||||||||||||||||||||||||| |||||| |||| | ||  |||||||||| | | |||||  | | ||||     
T  1223191 atctcagcatgtaaggcatcacaagctccaatcttcttagtgtagcctttaatccatttaccatatgcgtcacgaaaaataccaccacaatcggaaatat 1223290  T
Q  119 ccctcatatctttgcaagcaccatc-atgttgagcttggtccaaccttcttgaggccgcttcca 181  Q
      | |||||| ||||| ||||| ||  ||||||||||| |||||||||| ||||| || |||||    
T  1223291 gacccatatccttgcaggcaccgtcgctgttgagcttgatccaaccttcctgaggtcgtttcca 1223354  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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