View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF10201A_low_34 (Length: 390)
Name: NF10201A_low_34
Description: NF10201A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10201A_low_34 |
 | |
|
Alignment Details
Target: chr2 (Bit Score: 342; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 342; E-Value: 0
Query Start/End: Original strand, 10 - 384
Target Start/End: Complemental strand, 10704139 - 10703765
Alignment:
| Q |
10 |
atgaagtgaaagaggaccactttatttagtgcaaatttgagtggatttgaagtgggtagctactagctaaatcataattaaatggatgcaagtaattgat |
109 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
10704139 |
atgaagtgaaagaggaccactttatttagtgcaaatttgagtggatttgaagtgggtagctactagctaaatcataattaaatggatgcaagtaattgat |
10704040 |
T |
|
| Q |
110 |
aaagtacctttgcnnnnnnngcataaaatagagggagcaaagggtcccaaaaaccttaaagatttagacttttgattaattggaggtggcaatggaccta |
209 |
Q |
| |
|
||||||||||||| |||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |
|
|
| T |
10704039 |
aaagtacctttgctttttttgcataaaataaagggagcaaagggtcccaaaaaccttaaagatttagacttttgattgattggaggtggcaatggaccta |
10703940 |
T |
|
| Q |
210 |
atagaaaagaaaatttgatctcaataatctagattaagtacttatttatttattggaggtggcaatggattaattgatttgaccccattgtatcttaagt |
309 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
10703939 |
atagaaaagaaaatttgatctcaataatctagattaagtacttatttatttattggaggtggcaatggattaattgatttgaccccattgtatcttaagt |
10703840 |
T |
|
| Q |
310 |
cttatttattgatgttgcctcaaccaacatagagttgttttcttcaagctaattgaagtttctttttattgttga |
384 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |
|
|
| T |
10703839 |
cttatttattgatgttgcctcaaccaacatagagttgttttcttcaagctaattaaagtttctttttattgttga |
10703765 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University