View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10201A_low_340 (Length: 208)
Name: NF10201A_low_340
Description: NF10201A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10201A_low_340 |
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Alignment Details
Target: chr4 (Bit Score: 128; Significance: 2e-66; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 128; E-Value: 2e-66
Query Start/End: Original strand, 20 - 179
Target Start/End: Complemental strand, 31828303 - 31828144
Alignment:
| Q |
20 |
caagaggacacgaccaccactgatccagttcatatttgaagattgtggattttgttaaccagttccaagagagtaatccgacttgatctacaatcttatc |
119 |
Q |
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| T |
31828303 |
caagaggacacgaccaccactgatccagttcatatttgaagattgtggattttgttaaccagttccaagagagtaatctgacttgatctacaatcttatc |
31828204 |
T |
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| Q |
120 |
agttgagacctttttgtcctgannnnnnnnagcgtttctcgccttccaaatgctccataa |
179 |
Q |
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||| |||||||||||||||||| |||||||||||||||||||||||||||||| |
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| T |
31828203 |
agtcgagacctttttgtcctgaatttttttagcgtttctcgccttccaaatgctccataa |
31828144 |
T |
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