View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10201A_low_341 (Length: 208)
Name: NF10201A_low_341
Description: NF10201A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10201A_low_341 |
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Alignment Details
Target: chr1 (Bit Score: 126; Significance: 4e-65; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 126; E-Value: 4e-65
Query Start/End: Original strand, 20 - 185
Target Start/End: Original strand, 1239856 - 1240021
Alignment:
| Q |
20 |
aacactcagtgtaaccacacaacaaataataaagaatctatacctatgacttataatccataattgtcttctaatcctcacacgttccttaaatataaca |
119 |
Q |
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| T |
1239856 |
aacactcattgtaaccacacaacaaattataaagaatctatacctatgacttataatccataattgtcttctaattctcacatgttctttaaatataaca |
1239955 |
T |
|
| Q |
120 |
cctgcttcagaaccacacccttcaaaaagcttatgaacaccttcaaatcttaatatttgaagctga |
185 |
Q |
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|| ||||| |||||||||||||||||||| || |||||||||||||||||||||||||| |||||| |
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| T |
1239956 |
cccgcttctgaaccacacccttcaaaaagtttgtgaacaccttcaaatcttaatatttggagctga |
1240021 |
T |
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