View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF10201A_low_347 (Length: 205)

Name: NF10201A_low_347
Description: NF10201A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF10201A_low_347
NF10201A_low_347
[»] chr6 (7 HSPs)
chr6 (22-205)||(34820630-34820813)
chr6 (30-192)||(34820287-34820449)
chr6 (39-192)||(34820179-34820332)
chr6 (30-192)||(34820521-34820683)
chr6 (39-192)||(34820413-34820566)
chr6 (22-153)||(34820747-34820878)
chr6 (79-121)||(34819943-34819985)


Alignment Details
Target: chr6 (Bit Score: 164; Significance: 7e-88; HSPs: 7)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 164; E-Value: 7e-88
Query Start/End: Original strand, 22 - 205
Target Start/End: Original strand, 34820630 - 34820813
Alignment:
Q  22 catctaagttgtcatctgcgagctgatggttaacctcagctcccaaagccacctctgacgtaccaatatcattttttgtgatactctcgtcaacaaaact 121  Q
    ||||||||||||||||| | ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  34820630 catctaagttgtcatctacaagctgatggttaacctcagcttccaaagccacctctgacgtaccaatatcattttttgtgatactctcgtcaacaaaact 34820729  T
Q  122 actattattttcagcttcatctaatttgtcgtctacgagatgatggttaacctcaacttccaaagccacctttgccttaccaac 205  Q
    ||||||||||||||||||||||||||||||||||||||| ||||||||||| ||||||||||||||||||||||||||||||||    
T  34820730 actattattttcagcttcatctaatttgtcgtctacgagctgatggttaacttcaacttccaaagccacctttgccttaccaac 34820813  T

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Target: chr6; HSP #2
Raw Score: 95; E-Value: 1e-46
Query Start/End: Original strand, 30 - 192
Target Start/End: Original strand, 34820287 - 34820449
Alignment:
Q  30 ttgtcatctgcgagctgatggttaacctcagctcccaaagccacctctgacgtaccaatatcattttttgtgatactctcgtcaacaaaactactattat 129  Q
    ||||| |||||||| ||||||| |||| || || |||||||||||||||||||||||| |||||||||||||||||||||||||||||||| ||||||||    
T  34820287 ttgtcgtctgcgagttgatggtcaaccacaacttccaaagccacctctgacgtaccaaaatcattttttgtgatactctcgtcaacaaaacaactattat 34820386  T
Q  130 tttcagcttcatctaatttgtcgtctacgagatgatggttaacctcaacttccaaagccacct 192  Q
    |||||||||||||| |||| || ||  |||| ||||||| ||||||||||| |||| ||||||    
T  34820387 tttcagcttcatctgatttatcttccgcgagctgatggtcaacctcaactttcaaaaccacct 34820449  T

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Target: chr6; HSP #3
Raw Score: 90; E-Value: 1e-43
Query Start/End: Original strand, 39 - 192
Target Start/End: Original strand, 34820179 - 34820332
Alignment:
Q  39 gcgagctgatggttaacctcagctcccaaagccacctctgacgtaccaatatcattttttgtgatactctcgtcaacaaaactactattattttcagctt 138  Q
    ||||| ||||||| |||||||||| |||||| ||||| ||||||||||| || |||||||||||| ||||||||||||||||||||||||| ||||||||    
T  34820179 gcgagttgatggtcaacctcagcttccaaagtcacctatgacgtaccaacattattttttgtgatgctctcgtcaacaaaactactattatattcagctt 34820278  T
Q  139 catctaatttgtcgtctacgagatgatggttaacctcaacttccaaagccacct 192  Q
      ||| ||||||||||| |||| ||||||| |||| ||||||||||||||||||    
T  34820279 tgtctgatttgtcgtctgcgagttgatggtcaaccacaacttccaaagccacct 34820332  T

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Target: chr6; HSP #4
Raw Score: 87; E-Value: 7e-42
Query Start/End: Original strand, 30 - 192
Target Start/End: Original strand, 34820521 - 34820683
Alignment:
Q  30 ttgtcatctgcgagctgatggttaacctcagctcccaaagccacctctgacgtaccaatatcattttttgtgatactctcgtcaacaaaactactattat 129  Q
    ||||| |||||||||||||||| || |||| || ||||| ||||||| ||| |||| | |||| |||| |||||||| ||||||||||||||||||||||    
T  34820521 ttgtcgtctgcgagctgatggtcaagctcaacttccaaaaccacctccgacataccgacatcaattttagtgatactttcgtcaacaaaactactattat 34820620  T
Q  130 tttcagcttcatctaatttgtcgtctacgagatgatggttaacctcaacttccaaagccacct 192  Q
    ||| |||||||||||| ||||| ||||| || ||||||||||||||| |||||||||||||||    
T  34820621 ttttagcttcatctaagttgtcatctacaagctgatggttaacctcagcttccaaagccacct 34820683  T

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Target: chr6; HSP #5
Raw Score: 86; E-Value: 3e-41
Query Start/End: Original strand, 39 - 192
Target Start/End: Original strand, 34820413 - 34820566
Alignment:
Q  39 gcgagctgatggttaacctcagctcccaaagccacctctgacgtaccaatatcattttttgtgatactctcgtcaacaaaactactattattttcagctt 138  Q
    ||||||||||||| ||||||| ||  |||| |||||||||| ||||||| |||||||||| ||| ||||||||||||||||||| ||||||||| |||||    
T  34820413 gcgagctgatggtcaacctcaactttcaaaaccacctctgatgtaccaacatcattttttatgacactctcgtcaacaaaactaatattatttttagctt 34820512  T
Q  139 catctaatttgtcgtctacgagatgatggttaacctcaacttccaaagccacct 192  Q
    ||||| ||||||||||| |||| ||||||| || ||||||||||||| ||||||    
T  34820513 catctgatttgtcgtctgcgagctgatggtcaagctcaacttccaaaaccacct 34820566  T

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Target: chr6; HSP #6
Raw Score: 84; E-Value: 4e-40
Query Start/End: Original strand, 22 - 153
Target Start/End: Original strand, 34820747 - 34820878
Alignment:
Q  22 catctaagttgtcatctgcgagctgatggttaacctcagctcccaaagccacctctgacgtaccaatatcattttttgtgatactctcgtcaacaaaact 121  Q
    ||||||| ||||| ||| |||||||||||||||| ||| || |||||||||||| || | |||||| |||||||||||||||||||||||||||||||||    
T  34820747 catctaatttgtcgtctacgagctgatggttaacttcaacttccaaagccacctttgccttaccaacatcattttttgtgatactctcgtcaacaaaact 34820846  T
Q  122 actattattttcagcttcatctaatttgtcgt 153  Q
    |||||||||| ||||||||||||| |||||||    
T  34820847 actattatttccagcttcatctaacttgtcgt 34820878  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 79 - 121
Target Start/End: Original strand, 34819943 - 34819985
Alignment:
Q  79 acgtaccaatatcattttttgtgatactctcgtcaacaaaact 121  Q
    ||||||||  ||||||||| |||||||||||||||||||||||    
T  34819943 acgtaccatcatcatttttggtgatactctcgtcaacaaaact 34819985  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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