View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10201A_low_35 (Length: 388)
Name: NF10201A_low_35
Description: NF10201A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10201A_low_35 |
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Alignment Details
Target: chr5 (Bit Score: 258; Significance: 1e-143; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 258; E-Value: 1e-143
Query Start/End: Original strand, 23 - 371
Target Start/End: Complemental strand, 8444070 - 8443729
Alignment:
| Q |
23 |
atgttatcccttccttccttgtacattgttaattgttaaagaaaagcaatgaccccttatccttnnnnnnntatcccattaccaaaaaataatcaacttt |
122 |
Q |
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| T |
8444070 |
atgttatcccttccttccttgtacattgttaa-------agaaaagcaatgaccccttatccttaaaaaaatattccattaccaaaaaataatcaatttt |
8443978 |
T |
|
| Q |
123 |
attttaaaatttttagttcagctagaactcgagtataatgattacataaaattctccataaagattgtaccaagaaagnnnnnnnngagataccttataa |
222 |
Q |
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|||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |||||||||||| |
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| T |
8443977 |
attttaaattttttagttcagctagaactcgagtataatgattacataaaattctccataaagattgtaccaagaaagaaaaaaaagggataccttataa |
8443878 |
T |
|
| Q |
223 |
agaagcttttttatggaggttatgagaattatttatctagtgcgtcttcacaacttcactacgaagatttaacatcgtgccatttgataatatttaattt |
322 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
8443877 |
agaagcttttttatggaggttatgagaattatttatctagtgcgtcttcacaacttcactacgaagatttaacatcgtgccatttgataatatttaattt |
8443778 |
T |
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| Q |
323 |
ttcacgtgagcaataaaattcttaatgctttaaatttatcatatgatgt |
371 |
Q |
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||||||||||||||||||||||| ||||||||||||||||||||||||| |
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| T |
8443777 |
ttcacgtgagcaataaaattctttatgctttaaatttatcatatgatgt |
8443729 |
T |
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