View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10201A_low_36 (Length: 387)
Name: NF10201A_low_36
Description: NF10201A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10201A_low_36 |
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| [»] scaffold0021 (2 HSPs) |
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Alignment Details
Target: scaffold0021 (Bit Score: 251; Significance: 1e-139; HSPs: 2)
Name: scaffold0021
Description:
Target: scaffold0021; HSP #1
Raw Score: 251; E-Value: 1e-139
Query Start/End: Original strand, 17 - 267
Target Start/End: Complemental strand, 156538 - 156288
Alignment:
| Q |
17 |
catacaatcaacctttataacctaaaaaggattaatgaaggtttaaaagtgtttacacaattgttctggtaatcttgatcttttacataaaaatcaatga |
116 |
Q |
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| T |
156538 |
catacaatcaacctttataacctaaaaaggattaatgaaggtttaaaagtgtttacacaattgttctggtaatcttgatcttttacataaaaatcaatga |
156439 |
T |
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| Q |
117 |
cctctcaaggtttggtcaggttcttgttgatatatagtttggtctgacaatgacctaagctctattagattcgctcgcgctttgtaccagtcaatatcga |
216 |
Q |
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| T |
156438 |
cctctcaaggtttggtcaggttcttgttgatatatagtttggtctgacaatgacctaagctctattagattcgctcgcgctttgtaccagtcaatatcga |
156339 |
T |
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| Q |
217 |
gtatgctacttctagtagaatacaaaccaattcaaaagtttgcgagtatcc |
267 |
Q |
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| T |
156338 |
gtatgctacttctagtagaatacaaaccaattcaaaagtttgcgagtatcc |
156288 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0021; HSP #2
Raw Score: 59; E-Value: 7e-25
Query Start/End: Original strand, 319 - 377
Target Start/End: Complemental strand, 156236 - 156178
Alignment:
| Q |
319 |
ctgttatgtgtggtttctattcttgctgctgctatacaccgaaatagctataatctatg |
377 |
Q |
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| T |
156236 |
ctgttatgtgtggtttctattcttgctgctgctatacaccgaaatagctataatctatg |
156178 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 38; Significance: 0.000000000002; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 20 - 81
Target Start/End: Original strand, 11728483 - 11728544
Alignment:
| Q |
20 |
acaatcaacctttataacctaaaaaggattaatgaaggtttaaaagtgtttacacaattgtt |
81 |
Q |
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| T |
11728483 |
acaatccacctttatatcctaaagaggattaatgaagctttacaactgtttacacaattgtt |
11728544 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 20 - 98
Target Start/End: Original strand, 33699884 - 33699962
Alignment:
| Q |
20 |
acaatcaacctttataacctaaaaaggattaatgaaggtttaaaagtgtttacacaattgttctggtaatcttgatctt |
98 |
Q |
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| T |
33699884 |
acaatccacctttataccctaaagaggattagtgaagctttacaattgatgactcaattgttcttgtgatcttgatctt |
33699962 |
T |
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