View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10201A_low_4 (Length: 539)
Name: NF10201A_low_4
Description: NF10201A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10201A_low_4 |
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Alignment Details
Target: chr2 (Bit Score: 268; Significance: 1e-149; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 268; E-Value: 1e-149
Query Start/End: Original strand, 7 - 274
Target Start/End: Original strand, 6285033 - 6285300
Alignment:
| Q |
7 |
aaaaggttaaataacatgccgaccagacaagttttttaagcaatgacacatgcatattaagacatttcagttcagatttaacaaattaagacatttcaac |
106 |
Q |
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| T |
6285033 |
aaaaggttaaataacatgccgaccagacaagttttttaagcaatgacacatgcatattaagacatttcagttcagatttaacaaattaagacatttcaac |
6285132 |
T |
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| Q |
107 |
catataaaatgtactacagtccaactcataatatacataatacatgtacaccattgcttttcagctcaaagttttctggaaggtatatgtcattcattac |
206 |
Q |
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| T |
6285133 |
catataaaatgtactacagtccaactcataatatacataatacatgtacaccattgcttttcagctcaaagttttctggaaggtatatgtcattcattac |
6285232 |
T |
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| Q |
207 |
cgatttagtgaaagtaatgttaattaatcattgtcaacattagtccaaattttctgcaaatggattag |
274 |
Q |
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| T |
6285233 |
cgatttagtgaaagtaatgttaattaatcattgtcaacattagtccaaattttctgcaaatggattag |
6285300 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 186; E-Value: 1e-100
Query Start/End: Original strand, 271 - 456
Target Start/End: Original strand, 6285328 - 6285513
Alignment:
| Q |
271 |
ttagagatccaacgtgattgacttcaacctttttcgttagttacaaagactcatagatcatgattaatactatatggactactagtaggttctaaatctt |
370 |
Q |
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| T |
6285328 |
ttagagatccaacgtgattgacttcaacctttttcgttagttacaaagactcatagatcatgattaatactatatggactactagtaggttctaaatctt |
6285427 |
T |
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| Q |
371 |
ctttaacagtcatttaaagacttctataaactttaattactttttatgcaggttttgtgtcaaagcagaacattgacgtggataag |
456 |
Q |
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| T |
6285428 |
ctttaacagtcatttaaagacttctataaactttaattactttttatgcaggttttgtgtcaaagcagaacattgacgtggataag |
6285513 |
T |
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