View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10201A_low_41 (Length: 374)
Name: NF10201A_low_41
Description: NF10201A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10201A_low_41 |
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Alignment Details
Target: chr3 (Bit Score: 339; Significance: 0; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 339; E-Value: 0
Query Start/End: Original strand, 6 - 368
Target Start/End: Original strand, 38834747 - 38835109
Alignment:
| Q |
6 |
agaaacaaagaaagataatagagaaattccccatcctatataaaatattaaaaatccaacttttgaaccattcaattcaaatgtatatctccataaggaa |
105 |
Q |
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| T |
38834747 |
agaaacaaagaaagataatagagaaattctccatcctatataaaatattaaaaatccaacttttgaaccattcaattcaaatgtatatctccataaggaa |
38834846 |
T |
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| Q |
106 |
tagaagaaagatggctagagtcaaatctgattcattcatgaaaactcaggagttcagataaaagttttacagaatattggtacagccaaaatctagtttc |
205 |
Q |
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|||||||||||||||||||||||||||||||||||||||| |||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
38834847 |
tagaagaaagatggctagagtcaaatctgattcattcatgcaaactcagttgttcagataaaagttttacagaatattggtacagccaaaatctagtttc |
38834946 |
T |
|
| Q |
206 |
actaaagcataaaatttcagttacattgtagtgcaattgcgggaatagtctagttgacttctacaaaatctgataattctgcatcctcatcggaatcatt |
305 |
Q |
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| T |
38834947 |
actaaagcataaaatttcagttacattgtagtgcaattgcgggaatagtctagttgacttctacaaaatctgataattctgcatactcatcggaatcatt |
38835046 |
T |
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| Q |
306 |
gtcactctcgtatccactcactacatatttgttttgattaggattagccctgtgaggcttagc |
368 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |
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| T |
38835047 |
gtcactctcgtatccactcactacatatttgttttgattaggattagccccgtgaggcttagc |
38835109 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 263 - 362
Target Start/End: Original strand, 9869448 - 9869550
Alignment:
| Q |
263 |
cttctacaaaatctgataattctgcatcctcatcg---gaatcattgtcactctcgtatccactcactacatatttgttttgattaggattagccctgtg |
359 |
Q |
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||||| ||||||||||||| |||||||||||||| || ||||||||||||||| || |||| ||||||||||| ||||| || |||| ||||| || |
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| T |
9869448 |
cttcttcaaaatctgataactctgcatcctcatcatcagactcattgtcactctcggattcactgactacatatttcatttgagtacgattggccctctg |
9869547 |
T |
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| Q |
360 |
agg |
362 |
Q |
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| T |
9869548 |
agg |
9869550 |
T |
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