View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF10201A_low_43 (Length: 368)

Name: NF10201A_low_43
Description: NF10201A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF10201A_low_43
NF10201A_low_43
[»] chr4 (2 HSPs)
chr4 (6-222)||(12103442-12103658)
chr4 (99-140)||(3788752-3788793)
[»] chr1 (2 HSPs)
chr1 (12-142)||(26628683-26628811)
chr1 (18-135)||(29982652-29982768)
[»] chr2 (2 HSPs)
chr2 (54-142)||(41645481-41645570)
chr2 (12-140)||(41481151-41481278)
[»] chr8 (1 HSPs)
chr8 (56-140)||(10879017-10879102)
[»] chr5 (1 HSPs)
chr5 (54-141)||(36948645-36948733)
[»] chr7 (1 HSPs)
chr7 (82-133)||(19796127-19796178)
[»] chr6 (3 HSPs)
chr6 (82-133)||(1418435-1418486)
chr6 (54-140)||(11749708-11749795)
chr6 (58-110)||(30912850-30912903)


Alignment Details
Target: chr4 (Bit Score: 143; Significance: 5e-75; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 143; E-Value: 5e-75
Query Start/End: Original strand, 6 - 222
Target Start/End: Original strand, 12103442 - 12103658
Alignment:
Q  6 agaaactacaaagtatttatatacataacttagagagaaaatcttatgtgtaactaactaacggacttatccaattgtaaagctaaacaaaattaactct 105  Q
    ||||||||||||||||||||||||||||||||||||| |||||||||||  ||||||||||||||||||||||||||||||| |||||||||||||||||    
T  12103442 agaaactacaaagtatttatatacataacttagagagcaaatcttatgt--aactaactaacggacttatccaattgtaaagttaaacaaaattaactct 12103539  T
Q  106 actaaacatgattat-ggattaataacaaactaatacattccacgatcaagaaagtaaaaggtgagatgaannnnnnnnnnn-gttgaaataaatagatc 203  Q
    ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||             |||||||||||||||||    
T  12103540 actaaacatgattattggattaataacaaactaatacattccacgatcaagaaagtaaaaggtgagatgatttttttttgtttgttgaaataaatagatc 12103639  T
Q  204 aactatcattagatgttaa 222  Q
    | |||||||||||||||||    
T  12103640 agctatcattagatgttaa 12103658  T

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Target: chr4; HSP #2
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 99 - 140
Target Start/End: Original strand, 3788752 - 3788793
Alignment:
Q  99 taactctactaaacatgattatggattaataacaaactaata 140  Q
    ||||||||||||||||||||||||||||||||||||||||||    
T  3788752 taactctactaaacatgattatggattaataacaaactaata 3788793  T

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Target: chr1 (Bit Score: 84; Significance: 8e-40; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 84; E-Value: 8e-40
Query Start/End: Original strand, 12 - 142
Target Start/End: Original strand, 26628683 - 26628811
Alignment:
Q  12 tacaaagtatttatatacataacttagagagaaaatcttatgtgtaactaactaacggacttatccaattgtaaagctaaacaaaattaactctactaaa 111  Q
    |||||| |||||||||||||||||||||| | || ||||||||  |||||||||||  |||||||||| |||||||||||||||| ||||||||||||||    
T  26628683 tacaaaatatttatatacataacttagagtgcaagtcttatgt--aactaactaacaaacttatccaaatgtaaagctaaacaaacttaactctactaaa 26628780  T
Q  112 catgattatggattaataacaaactaataca 142  Q
    |||||||||||||||||||||||||| ||||    
T  26628781 catgattatggattaataacaaactattaca 26628811  T

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Target: chr1; HSP #2
Raw Score: 54; E-Value: 6e-22
Query Start/End: Original strand, 18 - 135
Target Start/End: Original strand, 29982652 - 29982768
Alignment:
Q  18 gtatttatatacataacttagagagaaaatcttatgtgtaactaactaacggacttatccaattgtaaagctaaacaaaattaactctactaaacatgat 117  Q
    ||||||||||||||||||||||||  || ||||   |||| |||||||||  |||||||||| ||||||||||| || || |||||||||||||| ||||    
T  29982652 gtatttatatacataacttagagaacaagtcttca-tgtagctaactaacaaacttatccaaatgtaaagctaatcacaactaactctactaaacttgat 29982750  T
Q  118 tatggattaataacaaac 135  Q
    ||||||| ||||||||||    
T  29982751 tatggatcaataacaaac 29982768  T

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Target: chr2 (Bit Score: 62; Significance: 1e-26; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 54 - 142
Target Start/End: Original strand, 41645481 - 41645570
Alignment:
Q  54 tgtaactaactaacggacttatccaa-ttgtaaagctaaacaaaattaactctactaaacatgattatggattaataacaaactaataca 142  Q
    ||||||||||||||  |||||||||| ||||||||||||||| | |||||||||||||||||| ||||||||||||||||||||||||||    
T  41645481 tgtaactaactaacaaacttatccaaattgtaaagctaaacacacttaactctactaaacatggttatggattaataacaaactaataca 41645570  T

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Target: chr2; HSP #2
Raw Score: 59; E-Value: 6e-25
Query Start/End: Original strand, 12 - 140
Target Start/End: Complemental strand, 41481278 - 41481151
Alignment:
Q  12 tacaaagtatttatatacataacttagagagaaaatcttatgtgtaactaactaacggacttatccaattgtaaa-gctaaacaaaattaactctactaa 110  Q
    |||| |||||||||||| || |||||||||  || ||||||||  |||||||||||  |||||||||| |||||| ||||| || |||||||||||||||    
T  41481278 tacatagtatttatatatatgacttagagaacaagtcttatgt--aactaactaacaaacttatccaaatgtaaaagctaatcacaattaactctactaa 41481181  T
Q  111 acatgattatggattaataacaaactaata 140  Q
    |||| ||||||||||||||| |||||||||    
T  41481180 acattattatggattaataagaaactaata 41481151  T

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Target: chr8 (Bit Score: 50; Significance: 1e-19; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 56 - 140
Target Start/End: Original strand, 10879017 - 10879102
Alignment:
Q  56 taactaactaacggacttatccaattgtaaagctaaacaaaattaactctactaaac-atgattatggattaataacaaactaata 140  Q
    ||||||||||||  |||||||||| ||||||||||| || || ||||||| |||||| ||||||||||||||||||||||||||||    
T  10879017 taactaactaacaaacttatccaaatgtaaagctaatcacaactaactctgctaaacaatgattatggattaataacaaactaata 10879102  T

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Target: chr5 (Bit Score: 49; Significance: 6e-19; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 54 - 141
Target Start/End: Complemental strand, 36948733 - 36948645
Alignment:
Q  54 tgtaactaactaacggacttatccaattg-taaagctaaacaaaattaactctactaaacatgattatggattaataacaaactaatac 141  Q
    ||||||||||||||  |||||||||| || |||||||||||||| |||||||||  |||||| ||||||||||||| ||||||||||||    
T  36948733 tgtaactaactaacaaacttatccaaatggtaaagctaaacaaacttaactctaggaaacataattatggattaatcacaaactaatac 36948645  T

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Target: chr7 (Bit Score: 32; Significance: 0.000000008; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 82 - 133
Target Start/End: Original strand, 19796127 - 19796178
Alignment:
Q  82 gtaaagctaaacaaaattaactctactaaacatgattatggattaataacaa 133  Q
    |||||||||| ||||| ||||||||||| || ||||||||||||||| ||||    
T  19796127 gtaaagctaatcaaaactaactctactagacttgattatggattaatcacaa 19796178  T

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Target: chr6 (Bit Score: 32; Significance: 0.000000008; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 82 - 133
Target Start/End: Complemental strand, 1418486 - 1418435
Alignment:
Q  82 gtaaagctaaacaaaattaactctactaaacatgattatggattaataacaa 133  Q
    ||||| |||| ||||| |||||||||||||| ||||||||||||||| ||||    
T  1418486 gtaaaactaatcaaaactaactctactaaacttgattatggattaatcacaa 1418435  T

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Target: chr6; HSP #2
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 54 - 140
Target Start/End: Original strand, 11749708 - 11749795
Alignment:
Q  54 tgtaactaactaacggacttatccaattgtaaagctaaacaaaattaact-ctactaaacatgattatggattaataacaaactaata 140  Q
    |||||| |||||||  ||||||||||   ||||| |||||| |||||||| || |||| ||||||||||||||||| | |||||||||    
T  11749708 tgtaacaaactaacaaacttatccaaaattaaagataaacacaattaacttcttctaagcatgattatggattaatgaaaaactaata 11749795  T

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Target: chr6; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 58 - 110
Target Start/End: Original strand, 30912850 - 30912903
Alignment:
Q  58 actaactaacggacttatccaa-ttgtaaagctaaacaaaattaactctactaa 110  Q
    ||||||||||  | |||||||| ||||||||||||||||| |||||||||||||    
T  30912850 actaactaacaaatttatccaaattgtaaagctaaacaaacttaactctactaa 30912903  T

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