View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10201A_low_44 (Length: 368)
Name: NF10201A_low_44
Description: NF10201A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10201A_low_44 |
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Alignment Details
Target: chr2 (Bit Score: 279; Significance: 1e-156; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 279; E-Value: 1e-156
Query Start/End: Original strand, 1 - 359
Target Start/End: Complemental strand, 2242333 - 2241971
Alignment:
| Q |
1 |
tatgtatacatgtatgcttcatcatgtatttgtatccatcctaaatctataatcctcttcaaaacaaaaatattagaatttttgagtcaacaaatgaacg |
100 |
Q |
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| T |
2242333 |
tatgtatacatgtatgcttcatcatgtatttgtatccatcctaaatctatgatcctcttcaaaacaaaaatattagaatttttgagtcaacaaatgaacg |
2242234 |
T |
|
| Q |
101 |
attttataagctaataatttgtaagttcatatgacatgaactacaacataacataaccaaagatccaaatcataaactaaaatgacaaaaactgtggttg |
200 |
Q |
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| T |
2242233 |
attttataagctaataatttgtaagttcatatgacatgaacttcaacataacataaccaaagatccaaatcataaactaaaatgacaaaaactgtggttg |
2242134 |
T |
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| Q |
201 |
caaactacgaagttcagggtttcaacccctcaacacaaatcaagat---nnnnnnnnnntgaagattactatctcctactttcttcctatgctttgatac |
297 |
Q |
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|||||||||||||||| | |||||||||||||| |||||||||||| ||||||||||||||||||||||||||||||||||||||||| |
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| T |
2242133 |
caaactacgaagttcatgttttcaacccctcaaaacaaatcaagataaaaaaaataaaatgaagattactatctcctactttcttcctatgctttgatac |
2242034 |
T |
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| Q |
298 |
aaatcttcccagccatcaa-cccaagatcaatggcacttagtttatagcaacatcagtataat |
359 |
Q |
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| T |
2242033 |
aaatcgtcccagccatcaaccccaagatcaatgtcacttagtttatagcaacatcattataat |
2241971 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 16 - 90
Target Start/End: Original strand, 34860617 - 34860691
Alignment:
| Q |
16 |
gcttcatcatgtatttgtatccatcctaaatctataatcctcttcaaaacaaaaatattagaatttttgagtcaa |
90 |
Q |
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|||||||||||||||| | || ||||||||||||||| ||| |||||||||||||| ||||||||||||| |
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| T |
34860617 |
gcttcatcatgtatttccctgcaggctaaatctataatccactttcaaacaaaaatattatcatttttgagtcaa |
34860691 |
T |
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