View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10201A_low_45 (Length: 364)
Name: NF10201A_low_45
Description: NF10201A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10201A_low_45 |
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Alignment Details
Target: chr3 (Bit Score: 274; Significance: 1e-153; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 274; E-Value: 1e-153
Query Start/End: Original strand, 1 - 358
Target Start/End: Complemental strand, 31784794 - 31784437
Alignment:
| Q |
1 |
gttgtatgcgcctttttagccgtatctgcaagtaaatagggatcatgaagttcattgtcaccaatcaattttcgtttgtttatgaagtttagattaggaa |
100 |
Q |
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|||||||| ||| ||||||||| |||||| ||||||| |||||| ||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |
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| T |
31784794 |
gttgtatgtgcccttttagccgcatctgcgagtaaatggggatcgtgaagttcattgtcaccaatcaattttcgtttgtttatgaaatttagattaggaa |
31784695 |
T |
|
| Q |
101 |
tgacatttattgaattgttagctacaccagtgcttttgtttctgatgtctctaaccatatgttcaacttttatcttgatacctccgccccttacactcat |
200 |
Q |
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||| |||||||||||||||| |||||| |||||| ||||||||||||||||||||||||||||||||| ||||||||||||||||||| |||||||| |
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| T |
31784694 |
tgatgtttattgaattgttaggtacaccgatgctttggtttctgatgtctctaaccatatgttcaactttgatcttgatacctccgccccgtacactcag |
31784595 |
T |
|
| Q |
201 |
tattctttcctcataatagttggaaggttcccttgtttgcatcaaactattttggcaacctgagaaagaaaaaacaaatattgcattgtttacactaact |
300 |
Q |
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|||||||||||| ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |||||||| |
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| T |
31784594 |
cattctttcctcagaatagttggaaggttcccttgtttgcatcaaactattttggtaacctgagaaagaaaaaacaaatattgcattgtttgcactaact |
31784495 |
T |
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| Q |
301 |
tctcgtccatgcgagtctgtgatttttcctgtcttgatggcttgagacagactgcttt |
358 |
Q |
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| T |
31784494 |
tctcgtccatgcgagtctgtgatttttcctgtcttgatggcttgagacaaactgcttt |
31784437 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 233; Significance: 1e-129; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 233; E-Value: 1e-129
Query Start/End: Original strand, 40 - 313
Target Start/End: Original strand, 19631618 - 19631893
Alignment:
| Q |
40 |
ggatcatgaagttcattgtcaccaatcaattttcgtttgtttatgaagtttagattaggaatgacatttattgaattgttagctacaccagtgcttttgt |
139 |
Q |
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| T |
19631618 |
ggatcgtgaagttcattgtcaccaatcaattttcgtttgtttatgaaatttagattaggaatgacatttattgaattgttagctacaccgatgctttggt |
19631717 |
T |
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| Q |
140 |
ttctgatgtctctaaccatatgttcaacttttatcttgatacctccgccccttacactcattattc--tttcctcataatagttggaaggttcccttgtt |
237 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |||||||||||||||||||||||||||||||| |
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| T |
19631718 |
ttctgatgtctctaaccatatgttcaacttttatcttgatacctccgccccttacacttattattctttttcctcataatagttggaaggttcccttgtt |
19631817 |
T |
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| Q |
238 |
tgcatcaaactattttggcaacctgagaaagaaaaaacaaatattgcattgtttacactaacttctcgtccatgcg |
313 |
Q |
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||||||||||||||||||||||||||||||||||||||||||| | |||||||||||||||||||||||||||||| |
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| T |
19631818 |
tgcatcaaactattttggcaacctgagaaagaaaaaacaaatagtacattgtttacactaacttctcgtccatgcg |
19631893 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 309 - 358
Target Start/End: Original strand, 19633725 - 19633774
Alignment:
| Q |
309 |
atgcgagtctgtgatttttcctgtcttgatggcttgagacagactgcttt |
358 |
Q |
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| T |
19633725 |
atgcgagtctgtgatttttcctgtcttgatggcttgagacaaactgcttt |
19633774 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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