View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF10201A_low_47 (Length: 363)

Name: NF10201A_low_47
Description: NF10201A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF10201A_low_47
NF10201A_low_47
[»] chr5 (5 HSPs)
chr5 (200-363)||(32268817-32268980)
chr5 (176-334)||(41900158-41900316)
chr5 (160-232)||(32268755-32268825)
chr5 (251-326)||(41886271-41886346)
chr5 (184-233)||(12846943-12846992)
[»] chr7 (4 HSPs)
chr7 (177-244)||(15091347-15091414)
chr7 (180-242)||(10168806-10168868)
chr7 (180-242)||(10176331-10176393)
chr7 (264-305)||(10616209-10616250)
[»] chr4 (18 HSPs)
chr4 (177-238)||(2460597-2460658)
chr4 (183-256)||(2367656-2367729)
chr4 (189-238)||(2547544-2547593)
chr4 (183-235)||(2381378-2381430)
chr4 (177-237)||(6007665-6007725)
chr4 (183-241)||(566629-566687)
chr4 (183-236)||(2525763-2525816)
chr4 (189-234)||(12124836-12124881)
chr4 (189-234)||(12126892-12126937)
chr4 (177-242)||(55907434-55907499)
chr4 (183-235)||(2486313-2486365)
chr4 (183-235)||(5035628-5035680)
chr4 (177-223)||(1547469-1547515)
chr4 (191-241)||(2376228-2376278)
chr4 (197-235)||(2380123-2380161)
chr4 (189-238)||(2472104-2472153)
chr4 (204-244)||(8445271-8445311)
chr4 (184-224)||(12121009-12121049)
[»] chr3 (2 HSPs)
chr3 (177-244)||(513426-513493)
chr3 (191-242)||(51763146-51763197)
[»] chr6 (5 HSPs)
chr6 (183-243)||(14821628-14821688)
chr6 (183-235)||(6395781-6395833)
chr6 (187-235)||(6427432-6427480)
chr6 (189-223)||(6437161-6437195)
chr6 (183-225)||(7993319-7993361)
[»] chr8 (2 HSPs)
chr8 (183-242)||(32152212-32152271)
chr8 (189-235)||(39516869-39516915)
[»] chr2 (2 HSPs)
chr2 (177-242)||(1036176-1036241)
chr2 (189-242)||(44575177-44575230)
[»] chr1 (3 HSPs)
chr1 (183-232)||(15837967-15838016)
chr1 (183-242)||(33161439-33161498)
chr1 (191-235)||(52085556-52085600)


Alignment Details
Target: chr5 (Bit Score: 152; Significance: 2e-80; HSPs: 5)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 152; E-Value: 2e-80
Query Start/End: Original strand, 200 - 363
Target Start/End: Original strand, 32268817 - 32268980
Alignment:
Q  200 gatggagagtaactgtttggagacgatggagagagatttcaagcatcgattgttgtctttcaagaatttgaagacacattcccaacactcatctggtaga 299  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |    
T  32268817 gatggagagtaactgtttggagacgatggagagagatttcaagcatcgattgttgtctttcaagaatttgaagacacattcccaacactcatctggtaaa 32268916  T
Q  300 tatgaaccagaaatcattgattttcttcttcttttttcatcactggaccccaatgttcttcttc 363  Q
    |||||||||||||||||||||||||||||||||||| |||||||||||| ||||||||||||||    
T  32268917 tatgaaccagaaatcattgattttcttcttctttttgcatcactggaccgcaatgttcttcttc 32268980  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 87; E-Value: 1e-41
Query Start/End: Original strand, 176 - 334
Target Start/End: Complemental strand, 41900316 - 41900158
Alignment:
Q  176 aagagataatcgaagacggttggtgatggagagtaactgtttggagacgatggagagagatttcaagcatcgattgttgtctttcaagaatttgaagaca 275  Q
    |||||| |||||||||  ||||||||||||||| ||||||||||||||||  ||||||||||||||| |  |||| | |||||| | |||||||||||||    
T  41900316 aagagagaatcgaagagtgttggtgatggagagaaactgtttggagacgagtgagagagatttcaagtagtgattatcgtctttgaggaatttgaagaca 41900217  T
Q  276 cattcccaacactcatctggtagatatgaaccagaaatcattgattttcttcttctttt 334  Q
    |||||||||||||||||||||| ||||||||||||| | || |||||||||||| ||||    
T  41900216 cattcccaacactcatctggtaaatatgaaccagaacttatcgattttcttcttttttt 41900158  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 160 - 232
Target Start/End: Original strand, 32268755 - 32268825
Alignment:
Q  160 ggatcatagactgtgaaagagataatcgaagacggttggtgatggagagtaactgtttggagacgatggagag 232  Q
    |||||||||||||||| |||||  |||||||||||||||||||||||||||||||||||||||||||||||||    
T  32268755 ggatcatagactgtgagagaga--atcgaagacggttggtgatggagagtaactgtttggagacgatggagag 32268825  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 251 - 326
Target Start/End: Complemental strand, 41886346 - 41886271
Alignment:
Q  251 gttgtctttcaagaatttgaagacacattcccaacactcatctggtagatatgaaccagaaatcattgattttctt 326  Q
    ||||||||||| |||||||||||||||||||||||||||||| |||| |||  |||||  |||||||| |||||||    
T  41886346 gttgtctttcaggaatttgaagacacattcccaacactcatcaggtaaatagaaaccaccaatcattgtttttctt 41886271  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 184 - 233
Target Start/End: Original strand, 12846943 - 12846992
Alignment:
Q  184 atcgaagacggttggtgatggagagtaactgtttggagacgatggagaga 233  Q
    |||| |||||||||||||||||||| ||||| ||||| |||| |||||||    
T  12846943 atcggagacggttggtgatggagaggaactgcttggaaacgagggagaga 12846992  T

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Target: chr7 (Bit Score: 44; Significance: 6e-16; HSPs: 4)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 177 - 244
Target Start/End: Complemental strand, 15091414 - 15091347
Alignment:
Q  177 agagataatcgaagacggttggtgatggagagtaactgtttggagacgatggagagagatttcaagca 244  Q
    ||||| ||| |||||| ||||||||||||||| |||||||||||||||| ||||||||| ||||||||    
T  15091414 agagaaaatagaagactgttggtgatggagaggaactgtttggagacgagggagagagaattcaagca 15091347  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 180 - 242
Target Start/End: Complemental strand, 10168868 - 10168806
Alignment:
Q  180 gataatcgaagacggttggtgatggagagtaactgtttggagacgatggagagagatttcaag 242  Q
    ||||||||||||  ||||||||||||||| |||||||||||||| | ||| ||||| ||||||    
T  10168868 gataatcgaagagtgttggtgatggagaggaactgtttggagacaagggatagagaattcaag 10168806  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 180 - 242
Target Start/End: Complemental strand, 10176393 - 10176331
Alignment:
Q  180 gataatcgaagacggttggtgatggagagtaactgtttggagacgatggagagagatttcaag 242  Q
    ||||||||||||  ||||||||||||||| |||||||||||||| | ||| ||||| ||||||    
T  10176393 gataatcgaagagtgttggtgatggagaggaactgtttggagacaagggatagagaattcaag 10176331  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 264 - 305
Target Start/End: Original strand, 10616209 - 10616250
Alignment:
Q  264 aatttgaagacacattcccaacactcatctggtagatatgaa 305  Q
    |||||||||| |||||||||||||||||| |||| |||||||    
T  10616209 aatttgaagatacattcccaacactcatcaggtaaatatgaa 10616250  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 42; Significance: 0.000000000000009; HSPs: 18)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 177 - 238
Target Start/End: Original strand, 2460597 - 2460658
Alignment:
Q  177 agagataatcgaagacggttggtgatggagagtaactgtttggagacgatggagagagattt 238  Q
    ||||| ||||| ||||| |||||||||||||| |||||||||||||| ||||||||||||||    
T  2460597 agagagaatcggagacgattggtgatggagaggaactgtttggagaccatggagagagattt 2460658  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 183 - 256
Target Start/End: Complemental strand, 2367729 - 2367656
Alignment:
Q  183 aatcgaagacggttggtgatggagagtaactgtttggagacgatggagagagatttcaagcatcgattgttgtc 256  Q
    ||||| |||||||||||||||||||| || ||||||||||||||||| |||| || |||| | || ||||||||    
T  2367729 aatcggagacggttggtgatggagagaaattgtttggagacgatggaaagaggttccaagtagcggttgttgtc 2367656  T

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Target: chr4; HSP #3
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 189 - 238
Target Start/End: Original strand, 2547544 - 2547593
Alignment:
Q  189 agacggttggtgatggagagtaactgtttggagacgatggagagagattt 238  Q
    ||||||||||||||||| || ||||||||||||||||||||||| |||||    
T  2547544 agacggttggtgatggacagaaactgtttggagacgatggagagcgattt 2547593  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 183 - 235
Target Start/End: Complemental strand, 2381430 - 2381378
Alignment:
Q  183 aatcgaagacggttggtgatggagagtaactgtttggagacgatggagagaga 235  Q
    ||||| |||| ||||||||| |||||||||||||||||||||||||| |||||    
T  2381430 aatcggagactgttggtgatcgagagtaactgtttggagacgatggaaagaga 2381378  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 177 - 237
Target Start/End: Original strand, 6007665 - 6007725
Alignment:
Q  177 agagataatcgaagacggttggtgatggagagtaactgtttggagacgatggagagagatt 237  Q
    ||||| ||||| |||| ||||||||||||||| |||||||| ||||||| |||||||||||    
T  6007665 agagagaatcggagactgttggtgatggagaggaactgtttcgagacgagggagagagatt 6007725  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 183 - 241
Target Start/End: Original strand, 566629 - 566687
Alignment:
Q  183 aatcgaagacggttggtgatggagagtaactgtttggagacgatggagagagatttcaa 241  Q
    |||||||||| || |||||||||||| |||||||||||||| | ||||||||| |||||    
T  566629 aatcgaagactgtcggtgatggagagaaactgtttggagactaaggagagagaattcaa 566687  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 183 - 236
Target Start/End: Original strand, 2525763 - 2525816
Alignment:
Q  183 aatcgaagacggttggtgatggagagtaactgtttggagacgatggagagagat 236  Q
    |||||||||| |||||||||||| || |||||||| ||||||| ||||||||||    
T  2525763 aatcgaagactgttggtgatggacagaaactgttttgagacgagggagagagat 2525816  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 189 - 234
Target Start/End: Original strand, 12124836 - 12124881
Alignment:
Q  189 agacggttggtgatggagagtaactgtttggagacgatggagagag 234  Q
    |||||||||||||||||||| || ||||||||||| ||||||||||    
T  12124836 agacggttggtgatggagagaaattgtttggagacaatggagagag 12124881  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 189 - 234
Target Start/End: Original strand, 12126892 - 12126937
Alignment:
Q  189 agacggttggtgatggagagtaactgtttggagacgatggagagag 234  Q
    |||||||||||||||||||| || ||||||||||| ||||||||||    
T  12126892 agacggttggtgatggagagaaattgtttggagacaatggagagag 12126937  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 177 - 242
Target Start/End: Complemental strand, 55907499 - 55907434
Alignment:
Q  177 agagataatcgaagacggttggtgatggagagtaactgtttggagacgatggagagagatttcaag 242  Q
    ||||| |||||||||  ||||||||  ||||| ||||||||||||||| | |||||||||||||||    
T  55907499 agagagaatcgaagagtgttggtgactgagagaaactgtttggagacggttgagagagatttcaag 55907434  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 183 - 235
Target Start/End: Original strand, 2486313 - 2486365
Alignment:
Q  183 aatcgaagacggttggtgatggagagtaactgtttggagacgatggagagaga 235  Q
    ||||| ||||||||||||||||| || |||||||| ||||||| |||||||||    
T  2486313 aatcggagacggttggtgatggacagaaactgttttgagacgagggagagaga 2486365  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 183 - 235
Target Start/End: Original strand, 5035628 - 5035680
Alignment:
Q  183 aatcgaagacggttggtgatggagagtaactgtttggagacgatggagagaga 235  Q
    |||||||||||||||||||||||||| |||||||| || |||| ||| |||||    
T  5035628 aatcgaagacggttggtgatggagagaaactgttttgaaacgaaggaaagaga 5035680  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 177 - 223
Target Start/End: Complemental strand, 1547515 - 1547469
Alignment:
Q  177 agagataatcgaagacggttggtgatggagagtaactgtttggagac 223  Q
    ||||| ||||| |||||||||||||||||||| || |||||||||||    
T  1547515 agagagaatcggagacggttggtgatggagaggaattgtttggagac 1547469  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 191 - 241
Target Start/End: Complemental strand, 2376278 - 2376228
Alignment:
Q  191 acggttggtgatggagagtaactgtttggagacgatggagagagatttcaa 241  Q
    |||||||||||||||||| ||   ||||||||||||||||||||| |||||    
T  2376278 acggttggtgatggagagaaaagttttggagacgatggagagagacttcaa 2376228  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 197 - 235
Target Start/End: Complemental strand, 2380161 - 2380123
Alignment:
Q  197 ggtgatggagagtaactgtttggagacgatggagagaga 235  Q
    |||||| |||||||||||||||||||||||||| |||||    
T  2380161 ggtgatcgagagtaactgtttggagacgatggaaagaga 2380123  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 189 - 238
Target Start/End: Original strand, 2472104 - 2472153
Alignment:
Q  189 agacggttggtgatggagagtaactgtttggagacgatggagagagattt 238  Q
    ||||| |||||||||||||  |||||||||||||| ||||| ||||||||    
T  2472104 agacgattggtgatggagaaaaactgtttggagaccatggaaagagattt 2472153  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 204 - 244
Target Start/End: Complemental strand, 8445311 - 8445271
Alignment:
Q  204 gagagtaactgtttggagacgatggagagagatttcaagca 244  Q
    |||||||||||||| ||||||||||||||||| || |||||    
T  8445311 gagagtaactgttttgagacgatggagagagactttaagca 8445271  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 184 - 224
Target Start/End: Complemental strand, 12121049 - 12121009
Alignment:
Q  184 atcgaagacggttggtgatggagagtaactgtttggagacg 224  Q
    ||||||||||||||||||||||||| ||||| || ||||||    
T  12121049 atcgaagacggttggtgatggagaggaactgctttgagacg 12121009  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 177 - 244
Target Start/End: Complemental strand, 513493 - 513426
Alignment:
Q  177 agagataatcgaagacggttggtgatggagagtaactgtttggagacgatggagagagatttcaagca 244  Q
    ||||| ||||| |||  |||||||||||||||||||||||| ||||||  ||||||||||||||||||    
T  513493 agagagaatcggagattgttggtgatggagagtaactgttttgagacggcggagagagatttcaagca 513426  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 191 - 242
Target Start/End: Complemental strand, 51763197 - 51763146
Alignment:
Q  191 acggttggtgatggagagtaactgtttggagacgatggagagagatttcaag 242  Q
    ||||| |||||||||||| ||||||||||| |||||||||||||| ||||||    
T  51763197 acggtgggtgatggagaggaactgtttggaaacgatggagagagaattcaag 51763146  T

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Target: chr6 (Bit Score: 37; Significance: 0.000000000008; HSPs: 5)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 183 - 243
Target Start/End: Original strand, 14821628 - 14821688
Alignment:
Q  183 aatcgaagacggttggtgatggagagtaactgtttggagacgatggagagagatttcaagc 243  Q
    ||||||||||| |||||||| ||||| ||||| |||||||||| ||||||| |||||||||    
T  14821628 aatcgaagacgattggtgatagagaggaactgcttggagacgagggagagacatttcaagc 14821688  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 183 - 235
Target Start/End: Original strand, 6395781 - 6395833
Alignment:
Q  183 aatcgaagacggttggtgatggagagtaactgtttggagacgatggagagaga 235  Q
    ||||||||| | |||||||||||||| ||||| |||||||||| |||||||||    
T  6395781 aatcgaagatgattggtgatggagaggaactgcttggagacgagggagagaga 6395833  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 187 - 235
Target Start/End: Original strand, 6427432 - 6427480
Alignment:
Q  187 gaagacggttggtgatggagagtaactgtttggagacgatggagagaga 235  Q
    ||||||| |||||||||||||| ||||| |||||||||| |||||||||    
T  6427432 gaagacgattggtgatggagaggaactgcttggagacgagggagagaga 6427480  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 189 - 223
Target Start/End: Original strand, 6437161 - 6437195
Alignment:
Q  189 agacggttggtgatggagagtaactgtttggagac 223  Q
    |||||||||||||||||||| ||||||||||||||    
T  6437161 agacggttggtgatggagaggaactgtttggagac 6437195  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 183 - 225
Target Start/End: Complemental strand, 7993361 - 7993319
Alignment:
Q  183 aatcgaagacggttggtgatggagagtaactgtttggagacga 225  Q
    ||||| |||||| ||||||||||||| ||||||||||||||||    
T  7993361 aatcggagacggctggtgatggagaggaactgtttggagacga 7993319  T

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Target: chr8 (Bit Score: 36; Significance: 0.00000000003; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 183 - 242
Target Start/End: Original strand, 32152212 - 32152271
Alignment:
Q  183 aatcgaagacggttggtgatggagagtaactgtttggagacgatggagagagatttcaag 242  Q
    ||||| |||| ||||||||||||||| |||||||||||||||| |||||| || ||||||    
T  32152212 aatcggagactgttggtgatggagaggaactgtttggagacgagggagagtgaattcaag 32152271  T

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Target: chr8; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 189 - 235
Target Start/End: Original strand, 39516869 - 39516915
Alignment:
Q  189 agacggttggtgatggagagtaactgtttggagacgatggagagaga 235  Q
    |||||||||||||||| ||| || ||| |||||||||||||||||||    
T  39516869 agacggttggtgatggcgagaaattgtctggagacgatggagagaga 39516915  T

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Target: chr2 (Bit Score: 34; Significance: 0.0000000005; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 177 - 242
Target Start/End: Complemental strand, 1036241 - 1036176
Alignment:
Q  177 agagataatcgaagacggttggtgatggagagtaactgtttggagacgatggagagagatttcaag 242  Q
    ||||| |||||||||  ||||||||  ||||| ||||||||||||||| | |||||||||||||||    
T  1036241 agagagaatcgaagagtgttggtgactgagagaaactgtttggagacggttgagagagatttcaag 1036176  T

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Target: chr2; HSP #2
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 189 - 242
Target Start/End: Complemental strand, 44575230 - 44575177
Alignment:
Q  189 agacggttggtgatggagagtaactgtttggagacgatggagagagatttcaag 242  Q
    ||||| |||||||| ||||| |||||||| ||||||||||||||||| ||||||    
T  44575230 agacgattggtgattgagagaaactgttttgagacgatggagagagacttcaag 44575177  T

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Target: chr1 (Bit Score: 34; Significance: 0.0000000005; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 183 - 232
Target Start/End: Complemental strand, 15838016 - 15837967
Alignment:
Q  183 aatcgaagacggttggtgatggagagtaactgtttggagacgatggagag 232  Q
    ||||| |||||||||||||||||||| |||||||||||||| || |||||    
T  15838016 aatcggagacggttggtgatggagagaaactgtttggagaccatcgagag 15837967  T

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Target: chr1; HSP #2
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 183 - 242
Target Start/End: Original strand, 33161439 - 33161498
Alignment:
Q  183 aatcgaagacggttggtgatggagagtaactgtttggagacgatggagagagatttcaag 242  Q
    ||||||||||  || ||||||||||| |||||||||||||||| ||| ||||| ||||||    
T  33161439 aatcgaagactattagtgatggagagaaactgtttggagacgagggatagagaattcaag 33161498  T

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Target: chr1; HSP #3
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 191 - 235
Target Start/End: Original strand, 52085556 - 52085600
Alignment:
Q  191 acggttggtgatggagagtaactgtttggagacgatggagagaga 235  Q
    ||||||||||||||| || |||| ||||||||||||||| |||||    
T  52085556 acggttggtgatggaaaggaactttttggagacgatggaaagaga 52085600  T

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