View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF10201A_low_50 (Length: 361)
Name: NF10201A_low_50
Description: NF10201A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10201A_low_50 |
 | |
|
Alignment Details
Target: chr3 (Bit Score: 316; Significance: 1e-178; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 316; E-Value: 1e-178
Query Start/End: Original strand, 12 - 327
Target Start/End: Original strand, 46499393 - 46499708
Alignment:
| Q |
12 |
aatattatgaatataaatggagttcatgaatattaacaatataaaatgtggatatgaactatggatataattttctaatccatggatatgaaaaagcata |
111 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
46499393 |
aatattatgaatataaatggagttcatgaatattaacaatataaaatgtggatatgaactatggatataattttctaatccatggatatgaaaaagcata |
46499492 |
T |
|
| Q |
112 |
tattataatcggtgaatttacaagagtcgaaggggttgatcctaacaattagacttaaaagattaccattttagtttttcttctttaactttgaagtatc |
211 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
46499493 |
tattataatcggtgaatttacaagagtcgaaggggttgatcctaacaattagacttaaaagattaccattttagtttttcttctttaactttgaagtatc |
46499592 |
T |
|
| Q |
212 |
atgtgacactaggaactggtttacgatttttaatttatttttaggaataactaatttttctccgacctctctagatctccaacattgccctcctcccttc |
311 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
46499593 |
atgtgacactaggaactggtttacgatttttaatttatttttaggaataactaatttttctccgacctctctagatctccaacattgccctcctcccttc |
46499692 |
T |
|
| Q |
312 |
caacccaaatatctct |
327 |
Q |
| |
|
|||||||||||||||| |
|
|
| T |
46499693 |
caacccaaatatctct |
46499708 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University