View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10201A_low_51 (Length: 360)
Name: NF10201A_low_51
Description: NF10201A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10201A_low_51 |
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Alignment Details
Target: chr3 (Bit Score: 341; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 341; E-Value: 0
Query Start/End: Original strand, 14 - 354
Target Start/End: Complemental strand, 53676445 - 53676105
Alignment:
| Q |
14 |
gaaaaagaaagtgggatcccaactatccaaagccaaataggagtggctataactttttctttgctgaaaagcattacaagctcaaagaactctacccaaa |
113 |
Q |
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| T |
53676445 |
gaaaaagaaagtgggatcccaactatccaaagccaaataggagtggctataactttttctttgctgaaaagcattacaagctcaaagaactctacccaaa |
53676346 |
T |
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| Q |
114 |
cagagaaagggagtttaccaaaatgattggtcagtcctggaatagtctcagccctgaagaaagaatggtaattaaaagggtcatttcatttgtgtgtatt |
213 |
Q |
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| T |
53676345 |
cagagaaagggagtttaccaaaatgattggtcagtcctggaatagtctcagccctgaagaaagaatggtaattaaaagggtcatttcatttgtgtgtatt |
53676246 |
T |
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| Q |
214 |
gctttatcctaattggtctttacattgttgtttatctagaatctggttatcaaagttaatagttttgatttgagttagttcaaatgtagttatatgtgtg |
313 |
Q |
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| T |
53676245 |
gctttatcctaattggtctttacattgttgtttatctagaatctggttatcaaagttaatagttttgatttgagttagttcaaatgtagttatatgtgtg |
53676146 |
T |
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| Q |
314 |
ttcgcctaatattgcagatttaccaaaacattggcttaagg |
354 |
Q |
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| T |
53676145 |
ttcgcctaatattgcagatttaccaaaacattggcttaagg |
53676105 |
T |
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