View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10201A_low_53 (Length: 355)
Name: NF10201A_low_53
Description: NF10201A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10201A_low_53 |
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Alignment Details
Target: chr4 (Bit Score: 306; Significance: 1e-172; HSPs: 4)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 306; E-Value: 1e-172
Query Start/End: Original strand, 20 - 341
Target Start/End: Original strand, 2838500 - 2838821
Alignment:
| Q |
20 |
catcaagaacatcagactcagtatcataaaaggatctatgcatatcattgcacacttgatccttgtgttgactgttttcctccacctcttctccatggtc |
119 |
Q |
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| T |
2838500 |
catcaagaacatcagactcagtatcataaaaggatctatgcatatcattgcacgcttgatccttgtgttgactgttttcctccacctcttctccatggtc |
2838599 |
T |
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| Q |
120 |
tgcatcagcgcaatctttcttcacatttgatacgatgctttctgcctgtgatggatcatcacaagtttcaaatgaaagtgatggcctataactttcaaat |
219 |
Q |
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| T |
2838600 |
tgcatcagcgcaatctttcttcacatttgatacgatgctttctgcctgtgatggatcatcacaagtttcaaatgaaagtgatggcctataactttcaagt |
2838699 |
T |
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| Q |
220 |
tccttttccaaaaagagattctccttttcccttcttataagaatctcttgcataatattcatctcttcttcatcataagcagctctttcttcaattaacc |
319 |
Q |
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| T |
2838700 |
tccttttccaaaaagagattctccttttcccttcttataagaatctcttgcataatattcatctcttcttcatcataagcagctctttcttcaattaacc |
2838799 |
T |
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| Q |
320 |
tctcatattgtctgatgtccat |
341 |
Q |
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| T |
2838800 |
tctcatattgtctcatttccat |
2838821 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 95; E-Value: 2e-46
Query Start/End: Original strand, 203 - 341
Target Start/End: Original strand, 2842784 - 2842922
Alignment:
| Q |
203 |
gcctataactttcaaattccttttccaaaaagagattctccttttcccttcttataagaatctcttgcataatattcatctcttcttcatcataagcagc |
302 |
Q |
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| T |
2842784 |
gcctaaaagtttcaagttccttttccaaaaaaagattttccctttcccttcttataagaatctcttgcataatattcatctcttcttcatcataagaaac |
2842883 |
T |
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| Q |
303 |
tctttcttcaattaacctctcatattgtctgatgtccat |
341 |
Q |
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| T |
2842884 |
tctttcttcaattaacctctcgtattgtctcatttccat |
2842922 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 16 - 67
Target Start/End: Original strand, 2842522 - 2842573
Alignment:
| Q |
16 |
tggacatcaagaacatcagactcagtatcataaaaggatctatgcatatcat |
67 |
Q |
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| T |
2842522 |
tggacatcaagaacatcagactcagtatcataaaaggagctatgcaaatcat |
2842573 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 165 - 199
Target Start/End: Original strand, 2842671 - 2842705
Alignment:
| Q |
165 |
ctgtgatggatcatcacaagtttcaaatgaaagtg |
199 |
Q |
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| T |
2842671 |
ctgtgatggatcatcacatgtttcaaatgaaagtg |
2842705 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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