View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10201A_low_55 (Length: 354)
Name: NF10201A_low_55
Description: NF10201A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10201A_low_55 |
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Alignment Details
Target: chr2 (Bit Score: 194; Significance: 1e-105; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 194; E-Value: 1e-105
Query Start/End: Original strand, 10 - 277
Target Start/End: Original strand, 44734256 - 44734521
Alignment:
| Q |
10 |
actaagttagttaaaacacttgaaaattcaactgacac--aacaaggttaatttggttctctttcttttggtttttgtttgtgttcaaggtactgttgtt |
107 |
Q |
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|||||||||||||||||||||||||| ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |
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| T |
44734256 |
actaagttagttaaaacacttgaaaactcaactgacacacaacaaggttaatttggttctctttcttttggtttttgtttgtgttcaaggttctgttgtt |
44734355 |
T |
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| Q |
108 |
gtcgcgggaatgccactgctatttaaagccatcacaaacgacttaaggacccttttcacacnnnnnnnnnnnnggactaatgagtaatgaatgaccccac |
207 |
Q |
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|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |||||||||||| ||||||||||| |
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| T |
44734356 |
gtcgcgggaatgccactgctatttaaagtcatcacaaacgacttaaggacccttttcacacaaaaacaaaaaaggactaatgagt----aatgaccccac |
44734451 |
T |
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| Q |
208 |
ctagcatattctttctttctatccttttaacacatttacattgagagggatctattttattcctaaatgg |
277 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
44734452 |
ctagcatattctttctttctatccttttaacacatttacattgagagggatctattttattcctaaatgg |
44734521 |
T |
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