View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10201A_low_6 (Length: 498)
Name: NF10201A_low_6
Description: NF10201A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10201A_low_6 |
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| [»] scaffold0945 (2 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 410; Significance: 0; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 410; E-Value: 0
Query Start/End: Original strand, 7 - 484
Target Start/End: Complemental strand, 24546483 - 24546007
Alignment:
| Q |
7 |
tttaacgcccactcaaatcttcattccggtacaagatggtattttctgctttgcattcaccagcacttttagtaacgaatatggcatttatggaaaccat |
106 |
Q |
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|||||||||||| |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
24546483 |
tttaacgcccacccaaatcttcattccggtacaagatggtattttttgctttgcattcaccagcacttttagtaacgaatatggcatttatggaaaccat |
24546384 |
T |
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| Q |
107 |
gctcagtccaattatttgattgggtttgatttggaaaggcaagtggtatctttcaaggcgacagattgcaccaacgtacaagatgcaccttctattaatg |
206 |
Q |
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| T |
24546383 |
gctcagtcaaattatttgattgggtttgatttggaaaagcaactggtatctttcaaggcgacagattgcaccaacctacaagatgcaccttctattaatg |
24546284 |
T |
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| Q |
207 |
gggtgctccccaatgttctttctgcacccatgtaattgctccttttaccccttttactaattacattacaaaattaagctctctattatgatataaaggg |
306 |
Q |
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|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| | |
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| T |
24546283 |
gggtgctccccaatgttctttctgcacccatgtacttgctccttttaccccttttactaattatattacaaaattaagctctctattatgatataaatga |
24546184 |
T |
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| Q |
307 |
catggccataattgcttctgttttcgttctttctacaaacccatgaatgcttcttttatttggaccggtaattccatagtgtttgcttcaatttagagta |
406 |
Q |
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||||||||| ||||||||| ||||||||||||||||||||||||||||||||||||| ||||||| |||||||||||||||||||||||||||||||||| |
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| T |
24546183 |
catggccatcattgcttcttttttcgttctttctacaaacccatgaatgcttctttt-tttggactggtaattccatagtgtttgcttcaatttagagta |
24546085 |
T |
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| Q |
407 |
gactcggattaacaaagattgacttcatctttaagattaggctgaagagcctcttattggttttacacttcaattata |
484 |
Q |
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| T |
24546084 |
gactcaaattaacaaagattgacttcatctttaagattaggctgaagagcctcttattggttttacacttcaattata |
24546007 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 71; E-Value: 6e-32
Query Start/End: Original strand, 8 - 180
Target Start/End: Complemental strand, 24539105 - 24538936
Alignment:
| Q |
8 |
ttaacgcccactcaaatcttcattccggtacaagatggtattttctgctttgcattcaccagcacttttagtaacgaatatggcatttatggaaaccatg |
107 |
Q |
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||||||||| ||||||| ||||||||||||||||||| || ||||||||| ||| || | |||| | | | ||||||| || |||||||||| ||| |
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| T |
24539105 |
ttaacgcccgctcaaatgttcattccggtacaagatgataatttctgcttcgcagtcttcgacact---aatgaagaatatgtcacttatggaaactatg |
24539009 |
T |
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| Q |
108 |
ctcagtccaattatttgattgggtttgatttggaaaggcaagtggtatctttcaaggcgacagattgcaccaa |
180 |
Q |
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| T |
24539008 |
cccagtcaaactatttgattgggtttgatttggaaaggcaggtggtttctttcaaggcaacagattgcaccaa |
24538936 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0945 (Bit Score: 144; Significance: 2e-75; HSPs: 2)
Name: scaffold0945
Description:
Target: scaffold0945; HSP #1
Raw Score: 144; E-Value: 2e-75
Query Start/End: Original strand, 7 - 254
Target Start/End: Original strand, 394 - 632
Alignment:
| Q |
7 |
tttaacgcccactcaaatcttcattccggtacaagatggtattttctgctttgcattcaccagcacttttagtaacgaatatggcatttatggaaaccat |
106 |
Q |
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||||||||| |||||||||||||||||||||||| ||||||||||||||||||||||||||||| ||||||||||||||||||||| |||||||| | || |
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| T |
394 |
tttaacgccaactcaaatcttcattccggtacaatatggtattttctgctttgcattcaccagctcttttagtaacgaatatggcacttatggaagctat |
493 |
T |
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| Q |
107 |
gctcagtccaattatttgattgggtttgatttggaaaggcaagtggtatctttcaaggcgacagattgcaccaacgtacaagatgcaccttctattaatg |
206 |
Q |
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| T |
494 |
gtgcagtcaaattatttgattgggtttgatttggaaaagcaagtggtttctttcaaggccacagattgcaccaacttacaagatgcacc---------ta |
584 |
T |
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| Q |
207 |
gggtgctccccaatgttctttctgcacccatgtaattgctccttttac |
254 |
Q |
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| T |
585 |
gggtgctccccaattttctttcttcacccatgtacttgttccttttac |
632 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0945; HSP #2
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 343 - 403
Target Start/End: Original strand, 722 - 783
Alignment:
| Q |
343 |
aaacccatgaatgcttcttttatttggac-cggtaattccatagtgtttgcttcaatttaga |
403 |
Q |
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||||||||||||||||||||||||||||| ||| |||||| |||||||||||||||||||| |
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| T |
722 |
aaacccatgaatgcttcttttatttggacttggtcattccaaagtgtttgcttcaatttaga |
783 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 29; Significance: 0.0000007; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 116 - 180
Target Start/End: Complemental strand, 1667944 - 1667880
Alignment:
| Q |
116 |
aattatttgattgggtttgatttggaaaggcaagtggtatctttcaaggcgacagattgcaccaa |
180 |
Q |
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| T |
1667944 |
aattatttaataggatttgatttggatagacaagtggtctctttcaagccaacagattgtaccaa |
1667880 |
T |
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