View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10201A_low_61 (Length: 350)
Name: NF10201A_low_61
Description: NF10201A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10201A_low_61 |
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Alignment Details
Target: chr5 (Bit Score: 255; Significance: 1e-142; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 255; E-Value: 1e-142
Query Start/End: Original strand, 1 - 344
Target Start/End: Original strand, 7447143 - 7447498
Alignment:
| Q |
1 |
gttgataacggatatgatgatcacgtatttttcatggctaatgaaacatgttactacaatggcatggaatggataagtttgtact--------------- |
85 |
Q |
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| T |
7447143 |
gttgataacggatatgatgacgacgtatttttcatgcccaatgaaacatgttactacaatggcatggaatggataagtttgtacatgtagaagaaaaaaa |
7447242 |
T |
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| Q |
86 |
aattaagaatatattagtaataataatattgcatttgtacataatgtgaatgatcccaatatgtaaattaattgtttgctattagctagtgtgtttattt |
185 |
Q |
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| T |
7447243 |
aaaaaagaatatattagtaataata---tagcatttgtacataatgtgaatgatcccaatatgtaaattaattgtttgctactagctagtgtgtttattt |
7447339 |
T |
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| Q |
186 |
aactatgatttgggaacatatatatccattaacataatgattttcattttgactccaaatcgtatggtatccactactttagtttttgtcaccttctata |
285 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |
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| T |
7447340 |
aactatgatttgggaacatatatatccattaacataatgattttcattttgactccaaatggtatggtatccactactttagtttttgtcaccttctata |
7447439 |
T |
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| Q |
286 |
agatgtatatattcatgtgtcgtgtgttttaagctcatcaaattatcaatgctatattt |
344 |
Q |
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| T |
7447440 |
agatgtatatattcatgtgtcgtgtgttttaagctcatcaaattatcaatgctatattt |
7447498 |
T |
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