View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10201A_low_62 (Length: 350)
Name: NF10201A_low_62
Description: NF10201A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10201A_low_62 |
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Alignment Details
Target: chr7 (Bit Score: 127; Significance: 2e-65; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 127; E-Value: 2e-65
Query Start/End: Original strand, 204 - 344
Target Start/End: Complemental strand, 429526 - 429389
Alignment:
| Q |
204 |
ttgattactttagtgtagaaaacattcatttttattgcacatttgttgtgttaagaagagtggaattgttgttattttcagcgcttgcaagagggaacat |
303 |
Q |
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| T |
429526 |
ttgattactttagtgtagaaaacattcatttttattgcacatttgttgtgttaagaagagtggaattgtt---attttcagcgcttgcaagagggaacat |
429430 |
T |
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| Q |
304 |
atatatagcggtaacaccaatagaaaagctcatgtctattg |
344 |
Q |
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| T |
429429 |
atatatagcggtaacaccaatagaaaagctcatgtctattg |
429389 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 96; E-Value: 5e-47
Query Start/End: Original strand, 75 - 203
Target Start/End: Complemental strand, 429712 - 429578
Alignment:
| Q |
75 |
tcctgaggcgagtagttcttctggaagtgatcatgtctcaaa------tgatataaacatgaatgcttcttctgtagcttttgttgagtcagacaaggat |
168 |
Q |
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| T |
429712 |
tcctgaggagagtagttcttctggaagtgattatatctcaaaatcaaatgatatcaacatgaatgcttcttctgtagcttttgttgagtcagacaaggat |
429613 |
T |
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| Q |
169 |
actaattaaggaggtattattgaagttcttagcca |
203 |
Q |
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| T |
429612 |
actaattaaggaggtattattgaagttcttagcca |
429578 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 28 - 77
Target Start/End: Complemental strand, 429819 - 429770
Alignment:
| Q |
28 |
aagacgagcatggttatcaacgatgaggcgacactgctacaacggtttcc |
77 |
Q |
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| T |
429819 |
aagacgagcatggttatcaacgatgcggtgacacttctacaacggtttcc |
429770 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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