View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10201A_low_66 (Length: 345)
Name: NF10201A_low_66
Description: NF10201A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10201A_low_66 |
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Alignment Details
Target: chr1 (Bit Score: 231; Significance: 1e-127; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 231; E-Value: 1e-127
Query Start/End: Original strand, 83 - 325
Target Start/End: Complemental strand, 36971138 - 36970896
Alignment:
| Q |
83 |
acactactagctaaattgatgtaatagtagctagaaatgaacgatgaaggagataaaacgttgcccatagcgaatgtgggtagaataatgaagcaaaatc |
182 |
Q |
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| T |
36971138 |
acactactagctaaattgatgtaatagtagctagaaatgaacgatgagggagataaaacgttgcccatagcgaatgtgggtagaataatgaagcaaaatc |
36971039 |
T |
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| Q |
183 |
ttcctcccaatgcaaagatctcaaaagaaagcaaacagttgatgcaagaatgtgcgacagagttcataagtttcgtgacaggtgaagcatctgacaagtg |
282 |
Q |
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| T |
36971038 |
ttcctcccaatgcaaagatctcaaaagaaagcaaacagttgatgcaagaatgtgcgacagaattcataagtttcgtgacaggtgaagcatctgacaagtg |
36970939 |
T |
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| Q |
283 |
tcacaaggagaatcgcaagaccgttaatggggatgatatctgt |
325 |
Q |
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| T |
36970938 |
tcacaaggagaatcgcaagaccgttaatggggacgatatctgt |
36970896 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 69; E-Value: 6e-31
Query Start/End: Original strand, 11 - 79
Target Start/End: Complemental strand, 36971264 - 36971196
Alignment:
| Q |
11 |
gtgtttcacaaaacattacatgattcacttacacatgtaaaatcagacaatctatttaaagcaagtctt |
79 |
Q |
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| T |
36971264 |
gtgtttcacaaaacattacatgattcacttacacatgtaaaatcagacaatctatttaaagcaagtctt |
36971196 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 263 - 319
Target Start/End: Complemental strand, 39786381 - 39786325
Alignment:
| Q |
263 |
ggtgaagcatctgacaagtgtcacaaggagaatcgcaagaccgttaatggggatgat |
319 |
Q |
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| T |
39786381 |
ggtgaagcatctgacaagtgtcacaaggagaagcgcaagacagtgaatggtgatgat |
39786325 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 32; Significance: 0.000000008; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 223 - 294
Target Start/End: Original strand, 56067978 - 56068049
Alignment:
| Q |
223 |
gatgcaagaatgtgcgacagagttcataagtttcgtgacaggtgaagcatctgacaagtgtcacaaggagaa |
294 |
Q |
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| T |
56067978 |
gatgcaagagtgtgtatcagagttcataagcttcataacaggtgaagcatctgaaaagtgtcagaaagagaa |
56068049 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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