View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10201A_low_67 (Length: 342)
Name: NF10201A_low_67
Description: NF10201A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10201A_low_67 |
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Alignment Details
Target: chr7 (Bit Score: 233; Significance: 1e-129; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 233; E-Value: 1e-129
Query Start/End: Original strand, 80 - 336
Target Start/End: Original strand, 9635376 - 9635632
Alignment:
| Q |
80 |
gtgtttgtggcattacttctaagaaggtctaagagactagctggagctaagtcatgaagaacaaaactatcatcagatgaagctctaaattttgccataa |
179 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| ||||| ||||| |
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| T |
9635376 |
gtgtttgtggcattacttctaagaaggtctaagagactagctggagctgagtcatgaagaacaaaactatcatcagatgaagctctaagttttgtcataa |
9635475 |
T |
|
| Q |
180 |
aatctgcgtactgcttcccctctctgagagtatgagaaaccgtaatattaccgttttatgttttgaagaagaaccacataaacatgatatctctcaatgg |
279 |
Q |
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|||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
9635476 |
aatctgcgcactgcttcccctctctgagagtatgagaaaccgtaatattaccgttttatgttttgaagaagaaccacataaacatgatatctctcaatgg |
9635575 |
T |
|
| Q |
280 |
ggccattaagtagattgatagaaacaagagaatcaaaataacaagctagctccatat |
336 |
Q |
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||||||||||||||||||||||||| ||||||||||||||||||||||||| ||||| |
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| T |
9635576 |
ggccattaagtagattgatagaaacgagagaatcaaaataacaagctagcttcatat |
9635632 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 233; Significance: 1e-129; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 233; E-Value: 1e-129
Query Start/End: Original strand, 80 - 336
Target Start/End: Complemental strand, 13601870 - 13601614
Alignment:
| Q |
80 |
gtgtttgtggcattacttctaagaaggtctaagagactagctggagctaagtcatgaagaacaaaactatcatcagatgaagctctaaattttgccataa |
179 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| ||||| ||||| |
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| T |
13601870 |
gtgtttgtggcattacttctaagaaggtctaagagactagctggagctgagtcatgaagaacaaaactatcatcagatgaagctctaagttttgtcataa |
13601771 |
T |
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| Q |
180 |
aatctgcgtactgcttcccctctctgagagtatgagaaaccgtaatattaccgttttatgttttgaagaagaaccacataaacatgatatctctcaatgg |
279 |
Q |
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| T |
13601770 |
aatctgcgcactgcttcccctctctgagagtatgagaaaccgtaatattaccgttttatgttttgaagaagaaccacataaacatgatatctctcaatgg |
13601671 |
T |
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| Q |
280 |
ggccattaagtagattgatagaaacaagagaatcaaaataacaagctagctccatat |
336 |
Q |
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||||||||||||||||||||||||| ||||||||||||||||||||||||| ||||| |
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| T |
13601670 |
ggccattaagtagattgatagaaacgagagaatcaaaataacaagctagcttcatat |
13601614 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 129 - 336
Target Start/End: Complemental strand, 36186326 - 36186107
Alignment:
| Q |
129 |
agtcatgaagaacaaaactatcatcagatgaagctctaaattttgccataaaatctgcgtactgcttcccctctctgagagtatgagaaaccgtaatatt |
228 |
Q |
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||||||||||||||| || || |||| ||||| |||||| ||| ||||| ||||||||| || | ||||| | | ||||||| |||||||| |||||||| |
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| T |
36186326 |
agtcatgaagaacaagaccattatcaaatgaaactctaagtttcgccatgaaatctgcgaaccggttcccttttttgagagtgtgagaaactgtaatatt |
36186227 |
T |
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| Q |
229 |
accgt-------------tttatgttttgaagaagaaccacataaacatgatatctctcaatggggccattaagtagattgatagaaacaagagaatcaa |
315 |
Q |
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| T |
36186226 |
actttgaagaagcaattgtttatgttctgaagaaggaccgcataaacatgatatctctcaat-atgccattaagaagattgacgtaagcaagagaatcag |
36186128 |
T |
|
| Q |
316 |
aataacaagctagctccatat |
336 |
Q |
| |
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|||||||| |||||||||||| |
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| T |
36186127 |
aataacaacctagctccatat |
36186107 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 148 - 336
Target Start/End: Original strand, 19109431 - 19109615
Alignment:
| Q |
148 |
atcatcagatgaagctctaaattttgccataaaatctgcgtactgcttcccctctctgagagtatgagaaaccgtaatattaccgttttatgttttgaag |
247 |
Q |
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||||||||||||||||| || || |||||||||||| || | || ||||||||||||||||| ||||||||| ||||||||| ||||||| |
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| T |
19109431 |
atcatcagatgaagctcaaagcttcgccataaaatctacgcattggttcccctctctgagagtgtgagaaaccataatattac----------tttgaag |
19109520 |
T |
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| Q |
248 |
aa------gaaccacataaacatgatatctctcaatggggccattaagtagattgatagaaacaagagaatcaaaataacaagctagctccatat |
336 |
Q |
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| T |
19109521 |
aagcaattgtaccgcataaacatggtatctctcaacggggccattaagaagattgatgcaaataagagaattcgaataacaagttagctctatat |
19109615 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 50; Significance: 1e-19; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 232 - 332
Target Start/End: Original strand, 36185622 - 36185720
Alignment:
| Q |
232 |
gttttatgttttgaagaagaaccacataaacatgatatctctcaatggggccattaagtagattgatagaaacaagagaatcaaaataacaagctagctc |
331 |
Q |
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||||||||||||||||||||||| |||||||||| || |||||| |||||||||||| |||| || |||||||||||||| |||||||||||| ||| |
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| T |
36185622 |
gttttatgttttgaagaagaaccgcataaacatggta--tctcaacggggccattaagaagatatatgcaaacaagagaatcataataacaagctaactc |
36185719 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 233 - 333
Target Start/End: Original strand, 18889003 - 18889103
Alignment:
| Q |
233 |
ttttatgttttgaagaagaaccacataaacatgatatctctcaatggggccattaagtagattgatagaaacaagagaatcaaaataacaagctagctcc |
332 |
Q |
| |
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|||||||| ||||| ||| ||||||| ||||| || |||||||||| |||||||| | ||| || |||||||| ||||| | ||||||||||| ||| |
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| T |
18889003 |
ttttatgtattgaataagggccacatagacatggtacctctcaatggagccattaatcaaattaatgcaaacaagataatcagagtaacaagctagatcc |
18889102 |
T |
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| Q |
333 |
a |
333 |
Q |
| |
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| T |
18889103 |
a |
18889103 |
T |
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