View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF10201A_low_68 (Length: 341)
Name: NF10201A_low_68
Description: NF10201A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10201A_low_68 |
 | |
|
| [»] chr7 (1 HSPs) |
| |
|
| [»] chr4 (1 HSPs) |
| |
|
| [»] chr5 (1 HSPs) |
| |
|
| [»] chr8 (1 HSPs) |
| |
|
| [»] chr3 (2 HSPs) |
| |
|
Alignment Details
Target: chr7 (Bit Score: 293; Significance: 1e-164; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 293; E-Value: 1e-164
Query Start/End: Original strand, 22 - 341
Target Start/End: Original strand, 3036513 - 3036833
Alignment:
| Q |
22 |
tcagagtagcttacttgttcaagaacgacgcataaaatctcagaatcaagaaattgatattgagcaagctttgaaggtttcgaatggaggaagaggatct |
121 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
3036513 |
tcagagtagcttacttgttcaagaacgacgcataaaatctcagaatcaagaaattgatattgagcaagctttgaaggtttcgaatggaggaagaggatct |
3036612 |
T |
|
| Q |
122 |
atgggatttggtagaggaagagggcgttcaggtgctagaggaaagggtaggggaagaatcaacacagattctattgagtgttataagtgtcacgagctgg |
221 |
Q |
| |
|
||||||| ||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |||||| |
|
|
| T |
3036613 |
atgggatatggtagaggaagagggcattcaggtgctagaggaaagggtaggggaagaatcaacaaagattctattgagtgttataagtgtcacaagctgg |
3036712 |
T |
|
| Q |
222 |
gacactatcagaatgaatgtcccctatggg-gaaaaaatgcaaattatgctcaatttgaagatggtgaattgcttctgatggctcaatcatgcatgaaca |
320 |
Q |
| |
|
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
3036713 |
gacactatcagaatgaatgtcccctatgggaaaaaaaatgcaaattatgctcaatttgaagatggtgaattgcttctgatggctcaatcatgcatgaaca |
3036812 |
T |
|
| Q |
321 |
caaatgccaaagatgaggtat |
341 |
Q |
| |
|
||||||||||||||||||||| |
|
|
| T |
3036813 |
caaatgccaaagatgaggtat |
3036833 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 151; Significance: 7e-80; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 151; E-Value: 7e-80
Query Start/End: Original strand, 32 - 341
Target Start/End: Original strand, 16863270 - 16863580
Alignment:
| Q |
32 |
ttacttgttcaagaacgacgcataaaatctcagaatcaagaaattgatattgagcaagctttgaaggtttcgaatggaggaagaggatctatgggatttg |
131 |
Q |
| |
|
|||||||||||||||| |||||| ||| |||| |||||||||||||||||||| ||||||||||||| || ||||| |||||||||||| | |||| || |
|
|
| T |
16863270 |
ttacttgttcaagaacaacgcatgaaaactcaaaatcaagaaattgatattgaacaagctttgaaggcatctaatggtggaagaggatctgtaggatatg |
16863369 |
T |
|
| Q |
132 |
gtagaggaagagggcgttcaggtgctagaggaaagggtaggggaagaatcaacacagattctattgagtgtta-taagtgtcacgagctgggacactatc |
230 |
Q |
| |
|
|||||||||||||||||||||||| |||||||| |||||| |||||||| |||| | | |||| || || ||||||||| ||||||||||||||| |
|
|
| T |
16863370 |
gtagaggaagagggcgttcaggtgttagaggaaggggtagaggaagaattaacaatggaagtgttgaatgctacaaagtgtcacaagctgggacactatc |
16863469 |
T |
|
| Q |
231 |
agaatgaatgtcccctatggggaaaaaatgcaaattatgctcaatttgaagatggtgaattgcttctgatggctcaatcatgcatgaacacaaatgccaa |
330 |
Q |
| |
|
| ||||||||||| ||||||| | |||||||| | |||| | | |||||||||||||||||||||||||||||||||||||| |||||||||||||||| |
|
|
| T |
16863470 |
aaaatgaatgtcctctatgggaagaaaatgcacactatgttgagtttgaagatggtgaattgcttctgatggctcaatcatgtttgaacacaaatgccaa |
16863569 |
T |
|
| Q |
331 |
agatgaggtat |
341 |
Q |
| |
|
||||||||||| |
|
|
| T |
16863570 |
agatgaggtat |
16863580 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 124; Significance: 9e-64; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 124; E-Value: 9e-64
Query Start/End: Original strand, 26 - 341
Target Start/End: Original strand, 20528888 - 20529201
Alignment:
| Q |
26 |
agtagcttacttgttcaagaacgacgcataaaatctcagaatcaagaaattgatattgagcaagctttgaaggtttcgaatggaggaagaggatctatgg |
125 |
Q |
| |
|
||||| |||||||||||||||| |||||| |||||||| || ||||||| ||||| ||||||||||||||||||||| ||||| |||||||||||| ||| |
|
|
| T |
20528888 |
agtagtttacttgttcaagaacaacgcatgaaatctcaaaaccaagaaactgatactgagcaagctttgaaggtttctaatggtggaagaggatctgtgg |
20528987 |
T |
|
| Q |
126 |
gatttggtagaggaagagggcgttcaggtgctagaggaaagggtaggggaagaatcaacacagattctattgagtgttataagtgtcacgagctgggaca |
225 |
Q |
| |
|
||| ||| |||||||||||||||||| | ||||||| || | |||||||| |||| ||||| |||| || ||||||||||| |||| ||||| |
|
|
| T |
20528988 |
gatatgggagaggaagagggcgttcaag-caaagaggaagatgtggaggaagaattaaca-agatttagttgaatgcaataagtgtcacaagctaggaca |
20529085 |
T |
|
| Q |
226 |
ctatcagaatgaatgtcccctatggggaaaaaatgcaaattatgctcaatttgaagatggtgaattgcttctgatggctcaatcatgcatgaacacaaat |
325 |
Q |
| |
|
||||||||||||||||| ||||||| | |||| ||||||||||| ||||||||||||||||||| | ||| ||||||||| |||| ||||||||||| |
|
|
| T |
20529086 |
ctatcagaatgaatgtcatctatgggaaccaaattcaaattatgctgaatttgaagatggtgaatttcatctcatggctcaaacatgattgaacacaaat |
20529185 |
T |
|
| Q |
326 |
gccaaagatgaggtat |
341 |
Q |
| |
|
| |||||||||||||| |
|
|
| T |
20529186 |
gtcaaagatgaggtat |
20529201 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 102; Significance: 1e-50; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 102; E-Value: 1e-50
Query Start/End: Original strand, 23 - 341
Target Start/End: Complemental strand, 40613109 - 40612803
Alignment:
| Q |
23 |
cagagtagcttacttgttcaagaacgacgcataaaatctcagaatcaagaaattgatattgagcaagctttgaaggtttcgaatggaggaagaggatcta |
122 |
Q |
| |
|
|||||||| |||||||||||||||| || ||| |||||||| |||||||| |||||| |||| ||||||||||||||||| ||||| | |||||| | |
|
|
| T |
40613109 |
cagagtagtttacttgttcaagaacaacacatgaaatctcaaaatcaagacattgatgttgaacaagctttgaaggtttccaatggtgaaagaggtttcg |
40613010 |
T |
|
| Q |
123 |
tgggatttggtagaggaagagggcgttcaggtgctagaggaaagggtaggggaagaatcaacacagattctattgagtgttataagtgtcacgagctggg |
222 |
Q |
| |
|
|||| | ||||||||||||||| ||||||||||||||| ||||||||||||| || | ||||||||| |||||||| | || |||| |
|
|
| T |
40613009 |
tggggtatggtagaggaagaggacgttcaggtgctaga------------ggaagaatcaacaaagcaagtgttgagtgttttaagtgtcgcaagttggg |
40612922 |
T |
|
| Q |
223 |
acactatcagaatgaatgtcccctatggggaaaaaatgcaaattatgctcaatttgaagatggtgaattgcttctgatggctcaatcatgcatgaacaca |
322 |
Q |
| |
|
|||||| |||||||| ||||| ||||||| | ||||||| || | |||| | ||||||||||||||||| ||||| ||||| ||||| ||| |||||||| |
|
|
| T |
40612921 |
acactaccagaatgagtgtcctctatgggaagaaaatgctaactttgctaagtttgaagatggtgaattacttcttatggcccaatcttgcttgaacaca |
40612822 |
T |
|
| Q |
323 |
aatgccaaagatgaggtat |
341 |
Q |
| |
|
|| |||||||||||||||| |
|
|
| T |
40612821 |
aacgccaaagatgaggtat |
40612803 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 81; Significance: 4e-38; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 81; E-Value: 4e-38
Query Start/End: Original strand, 157 - 341
Target Start/End: Original strand, 20542323 - 20542507
Alignment:
| Q |
157 |
tagaggaaagggtaggggaagaatcaacacagattctattgagtgttataagtgtcacgagctgggacactatcagaatgaatgtcccctatggggaaaa |
256 |
Q |
| |
|
|||||||| ||| || ||||||||||||| || | ||||||||| ||||||||| |||||||||||||||||||||| ||||| ||||||| | || |
|
|
| T |
20542323 |
tagaggaaggggcagaggaagaatcaacaaagcaagtgttgagtgtttcaagtgtcacaagctgggacactatcagaatgagtgtcctctatgggaagaa |
20542422 |
T |
|
| Q |
257 |
aatgcaaattatgctcaatttgaagatggtgaattgcttctgatggctcaatcatgcatgaacacaaatgccaaagatgaggtat |
341 |
Q |
| |
|
||||| || | |||| | ||||||||||||||||| ||||| ||||||||||| ||| |||||||||| |||||||||||||||| |
|
|
| T |
20542423 |
aatgctaactttgctgagtttgaagatggtgaattacttcttatggctcaatcttgcttgaacacaaacgccaaagatgaggtat |
20542507 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 23 - 99
Target Start/End: Original strand, 20542213 - 20542289
Alignment:
| Q |
23 |
cagagtagcttacttgttcaagaacgacgcataaaatctcagaatcaagaaattgatattgagcaagctttgaaggt |
99 |
Q |
| |
|
|||||||| |||||||||||||||| |||||| ||||||||||||||||| ||||| |||| |||||||||||||| |
|
|
| T |
20542213 |
cagagtagtttacttgttcaagaacaacgcatgaaatctcagaatcaagactttgatgttgaacaagctttgaaggt |
20542289 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University