View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10201A_low_69 (Length: 340)
Name: NF10201A_low_69
Description: NF10201A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10201A_low_69 |
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| [»] scaffold0027 (1 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 286; Significance: 1e-160; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 286; E-Value: 1e-160
Query Start/End: Original strand, 1 - 326
Target Start/End: Original strand, 40821524 - 40821849
Alignment:
| Q |
1 |
gataagagtttcggtgtcctttatgtattgggatgatgtgatgttggttatggcaatactaacttgtaacaaatagcaaaacaaaatgaacagaacagag |
100 |
Q |
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|||||||||||| |||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |
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| T |
40821524 |
gataagagtttcagtgtcctttatgtactgggatgatgtgatgttggttatggcaatactaacttgtaacaaagtgcaaaacaaaatgaacagaacagag |
40821623 |
T |
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| Q |
101 |
agcatatttgaacaacgactgaaacacccattatatgatcaacaattagactatgatacaaaaacaaccactctttcttattaatgatgatttgagattt |
200 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |
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| T |
40821624 |
agcatatttgaacaacgactgaaacacccattatatgatcaacaattagactatgatacaaaaacaaccactctttcttattaataatgatttgagattt |
40821723 |
T |
|
| Q |
201 |
ccttaaagtcaagagtctaaaaaatcacaagtaaatcatggatcttaaattctctatcattttaaaaacttaacgttgtttgagtcatttcactacttat |
300 |
Q |
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||||||||||||||||||||||||||||||||||||||||| ||| ||| ||||||||||||||| ||||||| |||||||||||||||||||||||||| |
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| T |
40821724 |
ccttaaagtcaagagtctaaaaaatcacaagtaaatcatggttctgaaaatctctatcattttaagaacttaatgttgtttgagtcatttcactacttat |
40821823 |
T |
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| Q |
301 |
ttaggttatcacttttcttttctttt |
326 |
Q |
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|||||||||||||||||||||||||| |
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| T |
40821824 |
ttaggttatcacttttcttttctttt |
40821849 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 141; Significance: 7e-74; HSPs: 4)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 141; E-Value: 7e-74
Query Start/End: Original strand, 1 - 238
Target Start/End: Complemental strand, 20292304 - 20292073
Alignment:
| Q |
1 |
gataagagtttcggtgtcctttatgtattgggatgatgtgatgttggttatggcaatactaacttgtaacaaatagcaaaacaaaatgaacagaacagag |
100 |
Q |
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| T |
20292304 |
gataagagtttcagcgtccttgatgaattgggatgatgtgatggtgtttatggcaatattaacttgtaacaaatagcaaaacaaaatgaacagaacagag |
20292205 |
T |
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| Q |
101 |
agcatatttgaacaacgactgaaacacccattatatgatcaacaattagactatgatacaaaaacaaccactctttcttattaatgatgatttgagattt |
200 |
Q |
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| T |
20292204 |
agcatatttga------actgaa--acccattatatgatcaacaagtagactatgatacaaaaa-aaccactctttcttattaataatgatttgagattt |
20292114 |
T |
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| Q |
201 |
c---cttaaagtcaagagtctaaaaaatcacaagtaaatca |
238 |
Q |
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| T |
20292113 |
ccttcttaacgtcaagagtctaaaaaatcacaggtaaatca |
20292073 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 5 - 114
Target Start/End: Complemental strand, 20301502 - 20301393
Alignment:
| Q |
5 |
agagtttcggtgtcctttatgtattgggatgatgtgatgttggttatggcaatactaacttgtaacaaatagcaaaacaaaatgaacagaacagagagca |
104 |
Q |
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| T |
20301502 |
agagtttcagggtccttgatgaattgggatgatgtgatggtgtctataccgatactaacacgtaacaaataggaaaacagaatgaacaaaacaaagaaca |
20301403 |
T |
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| Q |
105 |
tatttgaaca |
114 |
Q |
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||||||||| |
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| T |
20301402 |
gatttgaaca |
20301393 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 16 - 92
Target Start/End: Original strand, 20064915 - 20064991
Alignment:
| Q |
16 |
gtcctttatgtattgggatgatgtgatgttggttatggcaatactaacttgtaacaaatagcaaaacaaaatgaaca |
92 |
Q |
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| T |
20064915 |
gtccttgatgaattgggatgatgtgatggtgtctataccgatactaacatgtaacaaatacaaaaacacaatgaaca |
20064991 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 107 - 182
Target Start/End: Original strand, 20092587 - 20092660
Alignment:
| Q |
107 |
tttgaacaacgactgaaacacccattatatgatcaacaattagactatgatacaaaaacaaccactctttcttatt |
182 |
Q |
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| T |
20092587 |
tttgaacaacacctgaaacac--attatgtgatcaatactaaaagtatgatacataaacaaccactctttcttatt |
20092660 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0027 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: scaffold0027
Description:
Target: scaffold0027; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 71 - 116
Target Start/End: Original strand, 135558 - 135603
Alignment:
| Q |
71 |
aaatagcaaaacaaaatgaacagaacagagagcatatttgaacaac |
116 |
Q |
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| T |
135558 |
aaatagcaaaacaaaattaacaaaacagagaacacatttgaacaac |
135603 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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