View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF10201A_low_7 (Length: 488)

Name: NF10201A_low_7
Description: NF10201A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF10201A_low_7
NF10201A_low_7
[»] chr8 (3 HSPs)
chr8 (12-488)||(32534200-32534676)
chr8 (366-455)||(32549445-32549534)
chr8 (21-57)||(32549959-32549995)


Alignment Details
Target: chr8 (Bit Score: 437; Significance: 0; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 437; E-Value: 0
Query Start/End: Original strand, 12 - 488
Target Start/End: Complemental strand, 32534676 - 32534200
Alignment:
Q  12 atgaatgcgaactgagttttggtgacaaattgtatcaagctaggaagcatgtgcaggacatgtctagaataacaagagctcattgacatgtgatgaccaa 111  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |||||||||||||| |||||||||||||||||||||    
T  32534676 atgaatgcgaactgagttttggtgacaaattgtatcaagctaggaagcatgtgtaggacatgtatagaataacaagaggtcattgacatgtgatgaccaa 32534577  T
Q  112 ttgtagattctacaagacatgatgggctaagatacaacgtgcaaacttaatataatgctaaaataaaaatacaaattctaaattatactactaaagacat 211  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||    
T  32534576 ttgtagattctacaagacatgatgggctaagatacaacgtgcaaacttaatataatgctaacataaaaatacaaattctaaattatactactaaagacat 32534477  T
Q  212 cattgtttctcaagtcagcattagtcattataaaatactacagtatttttatcaaacaattgtgctatcccagtactattgatactgaaattcaagcatg 311  Q
    |||||||||| ||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  32534476 cattgtttcttaagtcagcattagtcattatataatactacagtatttttatcaaacaattgtgctatcccagtactattgatactgaaattcaagcatg 32534377  T
Q  312 attgaattgtgtaggttagaaggatccaatataatatttgctagctattttggagtgtctaggctgttagtcatgcccttatttgcgagggttactagtc 411  Q
    |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| ||||||||||||||    
T  32534376 attgaattgtgtaggttagaaggatccaatataatatttgctagctgttttggagtgtctaggctgttagtcatgcccttatttgtgagggttactagtc 32534277  T
Q  412 cctgttggttaatgaatgttaactcaagcctttagacttcatttctcaccacgcgcctgcttttacttctgtgaggg 488  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |||||||||||||||    
T  32534276 cctgttggttaatgaatgttaactcaagcctttagacttcatttctcaccacgcgcttgctcttacttctgtgaggg 32534200  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 366 - 455
Target Start/End: Complemental strand, 32549534 - 32549445
Alignment:
Q  366 gtgtctaggctgttagtcatgcccttatttgcgagggttactagtccctgttggttaatgaatgttaactcaagcctttagacttcattt 455  Q
    |||||||||||||||||  |||||||  ||| || | | | | |||| |||||| ||||||||||||||||||| ||||||| |||||||    
T  32549534 gtgtctaggctgttagtagtgccctttattgtgacgctcatttgtccttgttggctaatgaatgttaactcaagtctttagatttcattt 32549445  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 21 - 57
Target Start/End: Complemental strand, 32549995 - 32549959
Alignment:
Q  21 aactgagttttggtgacaaattgtatcaagctaggaa 57  Q
    ||||||||||||| |||||||||||||||||||||||    
T  32549995 aactgagttttggagacaaattgtatcaagctaggaa 32549959  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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