View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10201A_low_71 (Length: 336)
Name: NF10201A_low_71
Description: NF10201A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10201A_low_71 |
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| [»] scaffold0036 (1 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 295; Significance: 1e-166; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 295; E-Value: 1e-166
Query Start/End: Original strand, 12 - 326
Target Start/End: Original strand, 44146995 - 44147309
Alignment:
| Q |
12 |
aagaaaatgaatcaacaagacggaaattgattgagaaataattaaccaattaacaataatccaacacagctagtattaaatacttaaaagatgtaagatt |
111 |
Q |
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| T |
44146995 |
aagaaaatgaatcaacaagacggaaattgattgaggaataattaaccaattaacaataatccaacacagctagtattaaataattaaaagatgtaagatt |
44147094 |
T |
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| Q |
112 |
acatgataccatcctccatcatctgtgtactagttgaattgaatctatttgttgttattgaatattgactctcgctaaatctatgcactattcagataat |
211 |
Q |
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| T |
44147095 |
acatgatgccatcctccatcatctgtgtactagttgaattgaatctatttgttgttattgaatattgactctcgctaaatctatgcactattaagataat |
44147194 |
T |
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| Q |
212 |
gcagggtcctcttgttgtatgatttagttttcaattagatacacaactaaagcaagtttaatttacctcacagcatccagcaattggctagcaaagtgct |
311 |
Q |
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| T |
44147195 |
gcagggtcctcttgttgtatgatttagttttcaattagaaacacaactaaagcaagtttaatttacctcacagcatccagcaattggctagcaaagtgct |
44147294 |
T |
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| Q |
312 |
ttcttctgttggagg |
326 |
Q |
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| T |
44147295 |
ttcttctgttggagg |
44147309 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0036 (Bit Score: 49; Significance: 5e-19; HSPs: 1)
Name: scaffold0036
Description:
Target: scaffold0036; HSP #1
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 9 - 330
Target Start/End: Original strand, 7215 - 7519
Alignment:
| Q |
9 |
gagaagaaaatgaatcaacaagacggaaa-ttgattgagaaataattaaccaattaacaataatccaacacagctagtattaaatacttaaaagatgtaa |
107 |
Q |
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| T |
7215 |
gagaagaaaatgaatcaacaagccggaaagttgattgaagaataattaa-------acactaattcaacatagctagtatgaaatgcttcaaagatgtgg |
7307 |
T |
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| Q |
108 |
gattacatgataccatcctccatcatctgtgtactagttgaattgaatctatttgttgttattgaatattgactctcgcta-aatctatgcactattcag |
206 |
Q |
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| T |
7308 |
tattacataacaccatcctccattatctgtgta-tact--aattgaatctatttgttgctattga-------ctctcatttgaacctatgcactattcag |
7397 |
T |
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| Q |
207 |
ataatgcagggtcctcttgttgtatgatttagttttcaattagatacacaactaaagcaagtttaatttacctcacagcatccagcaattggctagcaaa |
306 |
Q |
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| T |
7398 |
atattgtagaatc-tctggttgcatgatttagttttccacgaataacacaattaaaggaagtaaaatt-acctcacagtatccagcaactggctagctat |
7495 |
T |
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| Q |
307 |
gtgctttcttctgttggagggagt |
330 |
Q |
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| T |
7496 |
gtgttttcttctgttggatggagt |
7519 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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