View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10201A_low_73 (Length: 334)
Name: NF10201A_low_73
Description: NF10201A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10201A_low_73 |
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Alignment Details
Target: chr5 (Bit Score: 219; Significance: 1e-120; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 219; E-Value: 1e-120
Query Start/End: Original strand, 17 - 310
Target Start/End: Original strand, 15423475 - 15423781
Alignment:
| Q |
17 |
acatcaaattaccagggaccctttccctgggaacctaaaggttaagacacnnnnnnnnn-ctaattttcttatggaaatg------------ttcctttc |
103 |
Q |
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| T |
15423475 |
acatcaaattaccagggaccctttcactgggaacctaaaggttaagacacaaaaaaaaaactaattttctcatggaaatgttattggcaatgttcctttc |
15423574 |
T |
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| Q |
104 |
aaattaatatttgcaagataactgttgttgcttccttaatggcttttacctgatatccttgtattcaattccctgatacaaatattgtaatatgcagagg |
203 |
Q |
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| T |
15423575 |
aaattaatatttgcaagataactgttgttgcttccttaatggcttttacctgatatccttgtattcaattccctgatacaaatattgtaatatgcagagg |
15423674 |
T |
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| Q |
204 |
aaagttttcatgagttcaaccattttggagatagaattcttttcatctgttctggttggatttctcatggaatccctaatattagcctctatagcataga |
303 |
Q |
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| T |
15423675 |
aaagttttcatgagttcaaccattttggagatggaattcttttcatctgttctggttggatttctcatggaatccctaatattagcctctatagcataga |
15423774 |
T |
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| Q |
304 |
ggtaata |
310 |
Q |
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||||||| |
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| T |
15423775 |
ggtaata |
15423781 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 219 - 276
Target Start/End: Original strand, 15431945 - 15432002
Alignment:
| Q |
219 |
tcaaccattttggagatagaattcttttcatctgttctggttggatttctcatggaat |
276 |
Q |
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| T |
15431945 |
tcaaacattttgtagatagacttactttcatctgttctggttggacttctcatggaat |
15432002 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 95 - 173
Target Start/End: Original strand, 15431781 - 15431856
Alignment:
| Q |
95 |
gttcctttcaaattaatatttgcaagataactgttgttgcttccttaatggcttttacctgatatccttgtattcaatt |
173 |
Q |
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| T |
15431781 |
gttcctttcaaattattatttgcttgataattgttgtt---tccttaatggcctttccctgatatcctcgtgttcaatt |
15431856 |
T |
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