View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10201A_low_75 (Length: 332)
Name: NF10201A_low_75
Description: NF10201A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10201A_low_75 |
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Alignment Details
Target: chr8 (Bit Score: 292; Significance: 1e-164; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 292; E-Value: 1e-164
Query Start/End: Original strand, 1 - 316
Target Start/End: Original strand, 4441167 - 4441480
Alignment:
| Q |
1 |
atcgcaaatatctgaatatttttaaggagcaattaatctcctaaatctatgaaacacttacacacgccctgtcaaccttgataatactttgcaaatatgt |
100 |
Q |
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| T |
4441167 |
atcgcaaatatctgaatatttttaaggagcaattaatctcctaaatctatgaaacacttacacacgccctgtcaaccttgataatactttgcaaatatgt |
4441266 |
T |
|
| Q |
101 |
aagcaattgaatgtaaccaaatatgttagtgtctgtgttgttgtccgacaccaaagtgtatatgacttcaatcttaagtatcagtgctaaatagttatga |
200 |
Q |
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| T |
4441267 |
aagcaattgaatgtaaccaa-tatgttagtgtc-gtgttgttgtccgacaccaaagtgtatatgacttcaatcttaagtatcagtcctaaatagttatga |
4441364 |
T |
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| Q |
201 |
aatgtgatataacattatttgtttgttcctcagtatttgtggtggaattcatctagacgtgcaaagcactacaccaataagtttaccattgctgaagatg |
300 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |
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| T |
4441365 |
aatgtgatataacattatttgtttgttcctcagtatttgtggtggaattcatctagacgtgcaaagcactacaccaataagtttaccatcgctgaagatg |
4441464 |
T |
|
| Q |
301 |
ctgctaattgatgtcc |
316 |
Q |
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|||||||||||||||| |
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| T |
4441465 |
ctgctaattgatgtcc |
4441480 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 54; Significance: 5e-22; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 170 - 311
Target Start/End: Complemental strand, 8383383 - 8383243
Alignment:
| Q |
170 |
aatcttaagtatcagtgctaaatagttatgaaatgtgatataacattatttgtttgttcctcagtatttgtggtggaattcatctagacgtgcaaagcac |
269 |
Q |
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||||||| |||||||||||||||||||||||| |||||||||| || ||| ||||||||| |||| |||| || |||||||||| || | |||||| |
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| T |
8383383 |
aatcttatgtatcagtgctaaatagttatgaa-tgtgatataaaataattcgtttgttccacagtctttgcaatgcaattcatctaaacatacaaagctt |
8383285 |
T |
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| Q |
270 |
tacaccaataagtttaccattgctgaagatgctgctaattga |
311 |
Q |
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| T |
8383284 |
tacgacaataagtttaccatcactgaagatactgctaattga |
8383243 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 194 - 311
Target Start/End: Complemental strand, 8367361 - 8367244
Alignment:
| Q |
194 |
gttatgaaatgtgatataacattatttgtttgttcctcagtatttgtggtggaattcatctagacgtgcaaagcactacaccaataagtttaccattgct |
293 |
Q |
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|||||||||| | |||||| || ||||||||||| | ||||||| || ||| |||||||||| || | |||||| |||| ||||||||||||||| || |
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| T |
8367361 |
gttatgaaatttcatataatataatttgtttgttacacagtattcgtagtgaaattcatctaaacattcaaagctctacgacaataagtttaccatcact |
8367262 |
T |
|
| Q |
294 |
gaagatgctgctaattga |
311 |
Q |
| |
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|||||| ||||||||||| |
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| T |
8367261 |
gaagatactgctaattga |
8367244 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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