View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10201A_low_79 (Length: 327)
Name: NF10201A_low_79
Description: NF10201A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10201A_low_79 |
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Alignment Details
Target: chr2 (Bit Score: 300; Significance: 1e-169; HSPs: 4)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 300; E-Value: 1e-169
Query Start/End: Original strand, 1 - 320
Target Start/End: Complemental strand, 5827283 - 5826964
Alignment:
| Q |
1 |
atcaagtaaaagtattctagggtttttcaatatagctcttgcaattgctatacgttgtttttgtccacctgataactgtgtgcctctttcgcctaccgat |
100 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
5827283 |
atcaagtaaaagtattctagggtttttcaatatagctcttgcaattgctatacgttgtttttgtccacctgataactgtgtgcctctttcgcctaccgaa |
5827184 |
T |
|
| Q |
101 |
gtattgtaaccacctggaagagagcttataaagttgtgtgcattggctgcgttagctgctgcaattatctcatcctccgtagcacctccttctttgccat |
200 |
Q |
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||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
5827183 |
gtattgtaaccacctggaagagagcttatgaagttgtgtgcattggctgcgttagctgctgcaattatctcatcctccgtagcacctccttctttgccat |
5827084 |
T |
|
| Q |
201 |
aagctatgttggcacgaatgcttttgttgaaaagaataggctcttgaccaaccaaacccatctgttgtctcaaccagcttagtttgaaagttttgatatt |
300 |
Q |
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|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |
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| T |
5827083 |
aagctatgttggcacgaatgctttcgttgaaaagaataggctcttgaccaaccaaacccatttgttgtctcaaccagcttagtttgaaagttttgatatt |
5826984 |
T |
|
| Q |
301 |
cagtccatctagtattatat |
320 |
Q |
| |
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|||||||||||||| ||||| |
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| T |
5826983 |
cagtccatctagtaatatat |
5826964 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 190; E-Value: 1e-103
Query Start/End: Original strand, 2 - 319
Target Start/End: Complemental strand, 5768829 - 5768512
Alignment:
| Q |
2 |
tcaagtaaaagtattctagggtttttcaatatagctcttgcaattgctatacgttgtttttgtccacctgataactgtgtgcctctttcgcctaccgatg |
101 |
Q |
| |
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||||| ||||||||| | |||||||||| || ||||||||||| || ||||| || || ||||| ||||||| ||||||||||||||| || || || | |
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| T |
5768829 |
tcaagcaaaagtattttggggtttttcagcatggctcttgcaatagcaatacgctgcttctgtcctcctgatagctgtgtgcctctttccccgacagagg |
5768730 |
T |
|
| Q |
102 |
tattgtaaccacctggaagagagcttataaagttgtgtgcattggctgcgttagctgctgcaattatctcatcctccgtagcacctccttctttgccata |
201 |
Q |
| |
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| | |||||| ||||||||||||||| || ||||||||||||||||| ||||||||||||||||||||||||||| |||||||||||||||||||||| |
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| T |
5768729 |
tgtcataaccatttggaagagagcttatgaaattgtgtgcattggctgctttagctgctgcaattatctcatcctccatagcacctccttctttgccata |
5768630 |
T |
|
| Q |
202 |
agctatgttggcacgaatgcttttgttgaaaagaataggctcttgaccaaccaaacccatctgttgtctcaaccagcttagtttgaaagttttgatattc |
301 |
Q |
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||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |||| | |
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| T |
5768629 |
agctatgttggcacgaatgctttcgttgaaaagaataggctcttgaccaaccaaacccatctgttgtctcaaccagcttagtctgaaagtttttatatcc |
5768530 |
T |
|
| Q |
302 |
agtccatctagtattata |
319 |
Q |
| |
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| ||||||||||| |||| |
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|
| T |
5768529 |
actccatctagtaatata |
5768512 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 123; E-Value: 4e-63
Query Start/End: Original strand, 125 - 319
Target Start/End: Original strand, 5829742 - 5829936
Alignment:
| Q |
125 |
cttataaagttgtgtgcattggctgcgttagctgctgcaattatctcatcctccgtagcacctccttctttgccataagctatgttggcacgaatgcttt |
224 |
Q |
| |
|
||||| ||| |||||||||| |||||||||||||||||||| ||||||||||| |||||||| |||||||| |||||| ||||||| ||||||||||||| |
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| T |
5829742 |
cttatgaagctgtgtgcatttgctgcgttagctgctgcaatgatctcatcctctgtagcacccccttcttttccataacctatgttagcacgaatgcttt |
5829841 |
T |
|
| Q |
225 |
tgttgaaaagaataggctcttgaccaaccaaacccatctgttgtctcaaccagcttagtttgaaagttttgatattcagtccatctagtattata |
319 |
Q |
| |
|
|||||||||||||||||||||||||||||| ||||| ||||||||||||||||||| | |||||||||||| || || ||||||||||| |||| |
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| T |
5829842 |
cgttgaaaagaataggctcttgaccaaccaaccccatttgttgtctcaaccagcttaatctgaaagttttgagatccactccatctagtaatata |
5829936 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 1 - 91
Target Start/End: Complemental strand, 5794875 - 5794793
Alignment:
| Q |
1 |
atcaagtaaaagtattctagggtttttcaatatagctcttgcaattgctatacgttgtttttgtccacctgataactgtgtgcctctttcg |
91 |
Q |
| |
|
||||||||||||||||||||||| ||||||||||||||||||| || ||||||||||||||||| ||||||||||||||||||| |
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| T |
5794875 |
atcaagtaaaagtattctagggtctttcaatatagctcttgca--------acattgtttttgtccacctggtaactgtgtgcctctttcg |
5794793 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 162; Significance: 2e-86; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 162; E-Value: 2e-86
Query Start/End: Original strand, 1 - 314
Target Start/End: Original strand, 29327132 - 29327445
Alignment:
| Q |
1 |
atcaagtaaaagtattctagggtttttcaatatagctcttgcaattgctatacgttgtttttgtccacctgataactgtgtgcctctttcgcctaccgat |
100 |
Q |
| |
|
|||||| ||||||||| |||||||||||| || ||||||||||| || || || || || ||||| || |||| ||||||||||||||||| || || |
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| T |
29327132 |
atcaagcaaaagtattttagggtttttcagcatggctcttgcaatcgcaatgcgctgcttctgtcctccagatagttgtgtgcctctttcgccaacagaa |
29327231 |
T |
|
| Q |
101 |
gtattgtaaccacctggaagagagcttataaagttgtgtgcattggctgcgttagctgctgcaattatctcatcctccgtagcacctccttctttgccat |
200 |
Q |
| |
|
|| | |||||| | |||||||| ||||| ||||||||||||||||||||||| |||||||| || |||||||||||||||||||| ||||||| |||| |
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| T |
29327232 |
gtgtcataaccatcaggaagagaacttatgaagttgtgtgcattggctgcgttcgctgctgctatgatctcatcctccgtagcaccatcttctttaccat |
29327331 |
T |
|
| Q |
201 |
aagctatgttggcacgaatgcttttgttgaaaagaataggctcttgaccaaccaaacccatctgttgtctcaaccagcttagtttgaaagttttgatatt |
300 |
Q |
| |
|
||||||||||||| |||||||||| |||||||||||||||||||||||||||||||||||| ||||||||||||||||||| | ||||||||||||||| |
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| T |
29327332 |
aagctatgttggcgcgaatgctttcgttgaaaagaataggctcttgaccaaccaaacccatttgttgtctcaaccagcttattctgaaagttttgatatc |
29327431 |
T |
|
| Q |
301 |
cagtccatctagta |
314 |
Q |
| |
|
|| ||||||||||| |
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| T |
29327432 |
cactccatctagta |
29327445 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 23 - 75
Target Start/End: Original strand, 3431216 - 3431268
Alignment:
| Q |
23 |
tttttcaatatagctcttgcaattgctatacgttgtttttgtccacctgataa |
75 |
Q |
| |
|
|||||||| ||||||||||||||||| || | ||| ||||||||||| ||||| |
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|
| T |
3431216 |
tttttcaacatagctcttgcaattgcaatcctttgcttttgtccaccagataa |
3431268 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 41 - 97
Target Start/End: Original strand, 17872391 - 17872447
Alignment:
| Q |
41 |
gcaattgctatacgttgtttttgtccacctgataactgtgtgcctctttcgcctacc |
97 |
Q |
| |
|
||||||||||| | ||||||||||||||||||||| || | |||||||| |||||| |
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|
| T |
17872391 |
gcaattgctattctttgtttttgtccacctgataattgaatccctctttctcctacc |
17872447 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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